| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2421 |
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| Symbol | rpoB |
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| ID | 2739846 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | - |
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| Start bp | 2449349 |
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| End bp | 2452852 |
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| Gene Length | 3504 bp |
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| Protein Length | 1167 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637161312 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | NP_973020 |
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| Protein GI | 42527922 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.142717 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGCAA GAGGTCAAAA AATAGATCGA AGGTATTACG GTAAGGATGT TCCGAATTTT
ATGGAGCTTC CTAATCTCAT CGATATTCAG ATTCAATCTT ACAATAAATT TTTAAACAAA
GAAAAAAAGA CAGATGAGAC CGAGATTGAG GGCTTAGAAT CGGTATTCCA TACAACTTTT
CCTATCGAAA GTACAAATGA AGACATGGCT TTGCAATATC TATCCTATTC TCTCGATTAT
GATAGTATTA AATTTTCTGA AATTGAATGC AAACAAAAGG GACTTACTTA TTCCGTCCCT
TTAAAAGCCG AAATAGACTT ATTTTTTAAA GAAACTAAGG AAATTCGCCG CAAAAACATC
TACATGGGCG ATATTCCTCT GATGACGGAA AGAGGAACCT TTATTATAAA CGGAGCGGAA
AGGGTTGTAG TTTCTCAGAT TCACCGTTCG CCTGGTGTTA TCTTTTCGCA TGAAAAGGGT
GTTTACTCAA GCCGCATTAT TCCATACCGA GGAACATGGC TTGAATTCGA AATAGATCAG
AAAAAAGAGC TTATCTACGC AAAGCTTGAC AGTAAAAAGC GAATTTTAGG TACGATATTT
TTACGTGCTC TCGGATATGA CACAAGAGAA AAAATTATCG ACCTTTTCTA TAAAACAAAG
ACAGCCAAAA TATCTCCGGA TAGGACAGAG TATGAAGAAT TAATAGGTCA GGTACTGGCC
AGAGATGTCT ATGTAAAGGG TGAAGACGGC GAAAAACGTA AAATGCATCA AGCCGGTGAA
AAAATTCATC CCCACAACAT CGACGATTTA ATTCAAAATG ACGTTAAAAA GATAACGATA
ATCGACTTTA AGGGAAAAGA CTCTTTGGAT TCTCAGATTA TCATCAATTG TTTTGAAAGA
GAAGAAATCA AGTACACTCC CGATCCGGCC GTAAACGATG AGCCCACTGT TGAAGATGCC
CTAAACGCAG TCTACAGCGT TATCCGTCCG GGAGATCCTA TTACCTACGA AAATGCAAAA
GAAGACCTGC ACAATATGTT TTTCACTGCA AGAAGGTACG ATATAGGTAA GGTCGGCCGA
TACAAATTAA ACAAAAAATT CGACTATTCC GATGACGTGA AAGGTACAAC CTTAATTGAA
GAAGATATAT TTAAGACAAT GAAATTTTTG ATCAAGGTTT ACATAGGTGA AGAAAGCATT
GACGATATCG ACCACTTAGG AAACAGGCGA ATTAGGTCAG TCGGCGAAAT TATGACCGAT
GTTCTAAAAA AAGCCTTTTC CAGAATGGAA CGTATTGCCC GTGACAGGAT GAGTTCTAAG
GAAATGGATA CCATCAAGCC TAAGGACTTA ATTTCCATTA AGCCCATCGT TGCGGCTATT
AAGGAATTCT TCGGAGCAAG CCAGTTGTCC CAGTTCATGG ATCAGGTAAA CCCCTTGGCC
GAGCTTACTC ATAAGCGCCG TCTTAATGCA TTAGGTCCAG GCGGTCTTTC GCGCGACAGG
GCAGGCTTCG AGGTACGAGA AGTTCACTAT ACCCATTATG GAAGAATGTG TCCTATCGAG
ACCCCTGAAG GTCCGAACAT CGGTCTTATA GTTTCTATGG CAAACTATGC CCGTGTAAAC
GAATACGGCT TTTTGGAAGC TCCCTATGTA AAGGTTGTAA ACGGGGTTGC TACCCGCGAA
ATCGAGTACC TGTCTGCAAT GGATGAAGAC AAATATTTTA TCGGACAGGT TTCTTCCGCT
ATCGGAAAGG ACGGAAAGAT CAATACGGAT CAAGTTTCGT GCCGAAAACT TGGAGACTAT
ACTTCAATAA GCCCGAAAGA TATCCAGTAC ATGGATGTTT CGCCTAAACA GATTATATCC
GTTTCGGCTT CTCTAATTCC CTTCCTTGAG CATGACGACG CTAACCGTGC CCTCATGGGC
TCTAACATGC AGCGTCAGGC TGTTCCTTTA GTTTTCCCCG AACCTCCGCG AGTCGGAACC
GGTATGGAAA AAAAGTGCGC CTATGATTCG GGCGTTTTGG TTAAGGCAAA AAGATCGGGA
AAGGTTGAGT TTGTTTCTTC CGATACGATT ATCATAGCCC CCGAAAAGGG AAAAAATAAA
GAAGATAAGG ACGAGTACAC TCTCTTAAAA TATCAAAGGA CGAACCAAGA AACCTGTTAC
CATCAGCGCC CCATCGTCAA TGTAGGCGAT ACGGTTAAGG CAGGCCAGCC CATAGCTGAC
GGTCCTGCAA CCTATAACGG AGAATTGGCC CTAGGCCGAA ATATCCTCGT AGGATTCGTT
CCTTGGAACG GTTATAACTA TGAAGACGCT ATCTTAATTT CACGCAGAGT TGTAAAAGAA
GATATGTTCA CTTCTATTCA TATAAAAGAG CTTTCAACCG ATGTTCGGGA AACAAAACTG
GGTGCCGAAA AGATGACCTG CGATATTCCG AATAAGTCCG AAAAGAGCTT GGATGACCTT
GACAGCGAAG GTATTATCCG CATAGGCTCT AAGGTAAAGC CCGGAGATAT CCTTGTCGGA
AAGGTTACTC CTAAGAGCGA AAGCGATACA ACCCCCGAAT TTAAGCTCCT TAATTCTATC
TTCGGTGAAA AGGCTAAGGA AGTTCGGGAT ACCTCCCTGC GTGTTCCCCA CGGAACCGAG
GGAACGGTTA TCGATGTTCA GCGCTTAAAG AGGGATCAGG GAGATGACTT GAGCCCCGGT
GTAGATGAAG TTGTAAAGGT CTTAATCGCT ACAAAACGAA AACTCCGCGA GGGGGACAAG
ATGGCAGGCC GCCACGGAAA CAAGGGTCTT GTAGCCAGAA TCCTCCCCGA AGAAGATATG
CCCTACATGG AAGACGGAAC ACCTCTTGAT ATTTGTCTAA ACCCGCTCGG TGTTCCTTCA
CGAATGAATA TCGGCCAGAT TTTGGAATCG GAGCTGGGCC TTGCAGGATT AAAATTGAAT
GAGTGGTACG AGTCTCCGGT TTTTGAGTCT CCCAGTATGG AACAGATTGA AGCGAAGCTT
AAAGAAGCAG GTTATCCTAC CAGCTCTAAG GTAAAACTCC GAGACGGCTT AACCGGCCGC
CTCTTTGAAA ACGAGGTATT TGTCGGGGTT ATCTACTTCT TAAAGCTGGC TCACTTGGTA
GACGACAAGA TGCACGCCCG ATCAACAGGC CCCTATTCTC TTGTTACCCA GCAGCCCTTG
GGCGGTAAGG CTCAATTCGG CGGTCAGCGT TTGGGAGAAA TGGAAGTTTG GGCCCTTGAA
GCTTACGGTG CAGCCAACAC CTTGCAGGAG CTTATTACAA TCAAGTCCGA CGATATGCAC
GGACGATCTA AAATATATGA ATCCATCGTT AAGGGCGAGC CTTCAAGCTC TGCCGGTATC
CCCGAATCCT TTAACGTATT GGTACAGGAA TTAAGAGGTT TAGCTCTAGA CTTTACAATC
TATGATGCAA AGGGTCAGCA GATTCCTTTA ACCGAAAGGG ATGAAGAGCT AATTAAACGC
GAAAAAACAA GTACTAACTT TTAA
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| Protein sequence | MFARGQKIDR RYYGKDVPNF MELPNLIDIQ IQSYNKFLNK EKKTDETEIE GLESVFHTTF
PIESTNEDMA LQYLSYSLDY DSIKFSEIEC KQKGLTYSVP LKAEIDLFFK ETKEIRRKNI
YMGDIPLMTE RGTFIINGAE RVVVSQIHRS PGVIFSHEKG VYSSRIIPYR GTWLEFEIDQ
KKELIYAKLD SKKRILGTIF LRALGYDTRE KIIDLFYKTK TAKISPDRTE YEELIGQVLA
RDVYVKGEDG EKRKMHQAGE KIHPHNIDDL IQNDVKKITI IDFKGKDSLD SQIIINCFER
EEIKYTPDPA VNDEPTVEDA LNAVYSVIRP GDPITYENAK EDLHNMFFTA RRYDIGKVGR
YKLNKKFDYS DDVKGTTLIE EDIFKTMKFL IKVYIGEESI DDIDHLGNRR IRSVGEIMTD
VLKKAFSRME RIARDRMSSK EMDTIKPKDL ISIKPIVAAI KEFFGASQLS QFMDQVNPLA
ELTHKRRLNA LGPGGLSRDR AGFEVREVHY THYGRMCPIE TPEGPNIGLI VSMANYARVN
EYGFLEAPYV KVVNGVATRE IEYLSAMDED KYFIGQVSSA IGKDGKINTD QVSCRKLGDY
TSISPKDIQY MDVSPKQIIS VSASLIPFLE HDDANRALMG SNMQRQAVPL VFPEPPRVGT
GMEKKCAYDS GVLVKAKRSG KVEFVSSDTI IIAPEKGKNK EDKDEYTLLK YQRTNQETCY
HQRPIVNVGD TVKAGQPIAD GPATYNGELA LGRNILVGFV PWNGYNYEDA ILISRRVVKE
DMFTSIHIKE LSTDVRETKL GAEKMTCDIP NKSEKSLDDL DSEGIIRIGS KVKPGDILVG
KVTPKSESDT TPEFKLLNSI FGEKAKEVRD TSLRVPHGTE GTVIDVQRLK RDQGDDLSPG
VDEVVKVLIA TKRKLREGDK MAGRHGNKGL VARILPEEDM PYMEDGTPLD ICLNPLGVPS
RMNIGQILES ELGLAGLKLN EWYESPVFES PSMEQIEAKL KEAGYPTSSK VKLRDGLTGR
LFENEVFVGV IYFLKLAHLV DDKMHARSTG PYSLVTQQPL GGKAQFGGQR LGEMEVWALE
AYGAANTLQE LITIKSDDMH GRSKIYESIV KGEPSSSAGI PESFNVLVQE LRGLALDFTI
YDAKGQQIPL TERDEELIKR EKTSTNF
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