| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2420 |
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| Symbol | |
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| ID | 2739845 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | - |
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| Start bp | 2445050 |
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| End bp | 2449324 |
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| Gene Length | 4275 bp |
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| Protein Length | 1424 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637161311 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | NP_973019 |
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| Protein GI | 42527921 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00279093 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAGATA TACAGGATTT TGACAGCTTG ATGATAAGGC TTGCTTCACC CGACACTATA
AGGGCTTGGT CCTATGGGGA AGTCAAAAAG CCTGAAACAA TCAATTACCG AACCTTGCGT
CCGGAGAGGG ACGGTTTGTT TTGCGAAAGA ATATTCGGAA CCACAAAGGA ATGGGAGTGT
TTTTGCGGAA AGTTTAAATC AATCCGTTAT AAGGGCGTTA TCTGCGACCG CTGCGGTGTT
GAGGTTACTC ACTTTAAGGT CCGCCGTGAA CGCATGGGAC ATATAGAACT TGCAGCCCCC
GTTTCTCATA TTTGGTATTA CCGCTCGGTA CCTAGCCGAA TGGGACTTTT ACTCAACCTA
CAGGTTGCAG CTCTGAGGTC TGTTTTGTAC TATGAAAAAT ACATCGTTAT AGATGCAAAC
GATACCGACT TGGAGCCCAT GCAGCTTTTA ACCGAAGATG AATACAGGGA TGCTCACGAA
CGCTATGGAG CTGCCTTTAC CGCAGGAATG GGAGCAGGGG CTATTAAAAC CCTTCTTCAA
AATATAAACT TGGATGAGCT TGCAGCCCAG CTTCGTGCTA AAATGATTGA AAAAGGTGCA
AAAAGCGATC AACGCCTTTT GCGCAGAATC GAAATAGTCG AAAATTTTAG AGCATCGGGC
AACAAACCCG AGTGGATGAT TCTTGATGTT ATTCCGGTTA TTCCTCCGGA TTTACGCCCA
ATGGTTCAGC TTGACGGAGG CCGCTTTGCA ACCTCCGACC TCAACGACTT GTATCGAAGG
GTTATTCACA GAAACAGCCG TTTGAGTAAG CTCATGGAAT TAAAGGCTCC CGATATTATT
ATCAGAAACG AAAAGAGAAT GCTCCAAGAA GCAGTCGATG CCTTGTTCGA TAACTCAAAG
CGCAAAAAGG CTATTAAAGG AGCTTCAAAC AGACCTCTAA AATCGATTTC CGATCTTTTA
AAAGGAAAGC AGGGAAGATT CCGCCAAAAC CTATTAGGTA AGCGAGTCGA CTATTCAGGC
CGATCCGTTA TCGTTGTAGG CCCCGAACTC AAGCTTTGGC AGTGCGGTCT GCCCACTAAG
ATGGCCTTGG AGCTGTTTAA GCCTTTTATA ATGAAAAAAC TTGTTCAAAA GGAAGTTGTT
TCCAATATTA AAAAGGCAAA ACTCCTCGTA GAGCAGGAAG CTGCCGAAGT TTTTGCAGTC
CTTGACGAGG TCGTAAGCGA ACATCCGGTT CTTTTAAACC GTGCTCCGAC CCTCCACAGG
CTTGGTATTC AGGCCTTTGA ACCCGTTTTG GTAGAAGGAA AGGCTATCCG CCTCCATCCT
CTTGTATGTA AGGCCTTTAA CGCCGACTTT GACGGCGACC AGATGGCTAT CCACGTTCCG
CTCACTCAGG CGGCTCAAAT GGAATGCTGG ACTTTGATGC TTTCAGCCCG AAACCTTCTA
GACCCTGCAA ACGGAAAAAC AATAGTTTTC CCGACACAGG ACATGGTTCT GGGTCTTTAC
TATCTTACAA AGGAAAGAGC TCTGCCTGAG GGTAAAAAAG AGCGCCTTTA TTCTTCCGTT
CCGGAAGTTT TGATGGCCGC AGAATGTCAT GCCGTAGGCT GGCAGGAACC CGTTTTAATC
GACTATGAAA CGGAACCCGG TAAGATTGAA ACCGTAAGAA CTACACCGGG AAGAATTCTG
TTTAACGAGG AAATGCCCGA AGGCGTTCCC TTTACAAATT ATGCTTTAAA CGATAAAAAA
ATACGAAAAC TGATAGAGAA TGTCTTTAAG GATAAGGGCC CGTGGCTGGC TGTTCAGCTT
TTGGACAAGC TCAAGGCTGT CGGCTATAAG TACGCTACAT ATTTCGGTGC AACTTTGAGT
ATGGAGGACA TGATTATTCC TCCTGAAAAG GCCGGAATGC TTGAAAAGGC CAACAAAGAG
GTTTTGGAAA TCTATAATCA GTATAAGGGC GGCCACATTA CCCAAGAAGA ACGCTATAAC
CGTGTTGTTG ACGTTTGGCA GAAGACAAAC TCCAATCTTA AAGAAATTCT TATGAAACGT
CTGCAAGAAG ACAAGGGCGG ATTTAACACG ATTCACATGA TGGAAACTTC GGGTGCTCGA
GGTTCTAAGG ATCAGATAAA TCAGCTTGCG GGAATGCGAG GTCTTATGTC CAAGCCTACG
GGAGACATCA TCGAACTTCC GATTAGATCG AACTTTAAAG AAGGCTTAAA CGTTATGGAA
TTCTTTATTT CGACTAACGG TGCCCGAAAA GGTTTGACCG ATACGGCTCT TAAAACCTCT
GACGCAGGTT ACCTGACCCG CCGTCTTGTT GATATTGCCC AAAACGTAGT TGTAAACGAA
GAAGACTGCG GCACCATCAA CGGTATAGAA TATGCCGCAA TTAAACGCGG AGACGAAATC
CGTGAGTCCT TGAGCGAACG TATTGCCGGA AAATACACTC TGGAAAGGGT TATTCACCCA
ATTACGGGAG AGCTTCTAAT CGATGTAAAC GAGTATATTA CCGATGAGAC AGCTAAGAAG
ATAGAAGAAG CCGGTGTTGA AACCGTTAAG CTCCGCACCG TTTTAACCTG CGAATCCAAG
CACGGTGTTT GCGTAAAATG TTACGGACGG GATCTTGCCC GAAACAGAAT TGTCCGAATA
GGGGAGGCTG TAGGTATTAT CGCAGCCCAG TCCATCGGTC AGCCCGGTAC ACAGCTTACG
ATGCGTACCT TCCATGAGGG CGGTACGGCT TCTAAAAACG TTGAAGAGAA CAGGATCGTA
TTTAACGATT ATTCTATCAT CGTTCGGGGT ATAAAGGGTT CTTATGTAAC GCTTAAAAAC
GGACACTTCC TCTTTACAAG AAAAGGCGAG TTTACCTTCA GCAGGGTATT GAATGAGTAT
GCTCTTAAAA AAGGTGAAAC AGCCCTTGTA AGTACAGGTA CAAGGGTAGT AAAGGGAAAT
CCTCTTTATA CATTAAAGAA CGGAAAGGAA GTTCTTTCGG AAAATATAGC CATTGCCGAG
GTCAGAGATA ATATTATCTA TTTGACAGGT CAAGAGCAGA CAATAGAGAT AAGAAACGGT
TCCGAGGTTG TAGTAAAAGA AAATGATGTT ATAAAGGCCG GAGAAACGGT AGGTACTTTC
GACCCCTTTG CCGATCCCAT TTTGGCAGAA TATGACGGCT TTGTCCGATT TGAAGATATT
CTTCCCGGTA CAACCTTAAA AGAAGAAGCC GATGAGGAAA CGGGTGTTGT CGAAAAGCGA
ATAAGTGATG CTCACTTCGA TAAGATGCAG CCCCGCATCT TTATCTCAGA TGAATCGGGT
AACACCGTAG GTGAGGACTC TTACTTCCTA CCCGGAGGTG CGCAGCTCTT GGTTGAAGAA
GGTCAGGAAA TTAAGGCCGG TGCAATCCTT GCAAAGATAG CAAAAGAGTC GGTAAAGACA
AAGGATATTA CCGGAGGTCT TCCGCGAGTT TCGGAGCTCC TTGAAGCCCG CAGACCAAAG
TCTCCTGCTG TTCTTGCCGC TATTGCCGGT GTTGTTACCA TAAAGAAAGG CTTACTTAAG
GGCAAGAGAA CTATTATGGT TCGAGACGAA TACGGTCATG ATGTAAAGCA CTTGGTTCCT
ATAGGAAAGA GAATGCTTGT CCGTGACGGA GATACGGTAA AGGCCGGAGA GCCCTTGTGT
GACGGCAGCT TTGATCCGCA CGATATTTTA AATATCCTCG GTGAAAATGC CCTTCAAAAC
TATTTGATGA AGGAAATCAA GGAAGTTTAC GATGCTCAGG GTGTTACCAT CAACGATAAA
CATGTAGGTA TAATCGTCCG CCAGATGCTC CGAAAGGTAA AGATTGTTTC GGTTGGAGAT
ACCAAGTTTA TCTTTGACCA GCAGATAGAT AAATACCGCT TCCATGAGGA AAATAAGAGG
GTTAAGGAAG AAGGCGGTCA GCCTGCAGTT GCCCGTCCTA TGTTCCAAGG AATTACAAAG
GCAGCCTTAA ACATCGATTC CTTTATTTCG GCCGCTTCTT TCCAAGAAAC CACGAAGGTT
CTTACAAATG CCGCTATTGC AGGTTCTTCG GATGAGCTTC GCGGTCTAAA GGAAAACGTA
ATTATCGGTC ATCTTATTCC TGCTGGAACA GGTATGAAGC AGTACCGAGA TATTAAACTT
TTCGATAAAA ATAAGAGTGA CTTGGATATT CAGATGAACG AAATCCTTGA ACGCCGAAGG
CTTGAAGCCG AAGCTGCTCA AGCTCTCGAA GAAAAAGAAC TTATCGAAGA AGAAAACTTT
TTGGATGATC TCTAA
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| Protein sequence | MRDIQDFDSL MIRLASPDTI RAWSYGEVKK PETINYRTLR PERDGLFCER IFGTTKEWEC
FCGKFKSIRY KGVICDRCGV EVTHFKVRRE RMGHIELAAP VSHIWYYRSV PSRMGLLLNL
QVAALRSVLY YEKYIVIDAN DTDLEPMQLL TEDEYRDAHE RYGAAFTAGM GAGAIKTLLQ
NINLDELAAQ LRAKMIEKGA KSDQRLLRRI EIVENFRASG NKPEWMILDV IPVIPPDLRP
MVQLDGGRFA TSDLNDLYRR VIHRNSRLSK LMELKAPDII IRNEKRMLQE AVDALFDNSK
RKKAIKGASN RPLKSISDLL KGKQGRFRQN LLGKRVDYSG RSVIVVGPEL KLWQCGLPTK
MALELFKPFI MKKLVQKEVV SNIKKAKLLV EQEAAEVFAV LDEVVSEHPV LLNRAPTLHR
LGIQAFEPVL VEGKAIRLHP LVCKAFNADF DGDQMAIHVP LTQAAQMECW TLMLSARNLL
DPANGKTIVF PTQDMVLGLY YLTKERALPE GKKERLYSSV PEVLMAAECH AVGWQEPVLI
DYETEPGKIE TVRTTPGRIL FNEEMPEGVP FTNYALNDKK IRKLIENVFK DKGPWLAVQL
LDKLKAVGYK YATYFGATLS MEDMIIPPEK AGMLEKANKE VLEIYNQYKG GHITQEERYN
RVVDVWQKTN SNLKEILMKR LQEDKGGFNT IHMMETSGAR GSKDQINQLA GMRGLMSKPT
GDIIELPIRS NFKEGLNVME FFISTNGARK GLTDTALKTS DAGYLTRRLV DIAQNVVVNE
EDCGTINGIE YAAIKRGDEI RESLSERIAG KYTLERVIHP ITGELLIDVN EYITDETAKK
IEEAGVETVK LRTVLTCESK HGVCVKCYGR DLARNRIVRI GEAVGIIAAQ SIGQPGTQLT
MRTFHEGGTA SKNVEENRIV FNDYSIIVRG IKGSYVTLKN GHFLFTRKGE FTFSRVLNEY
ALKKGETALV STGTRVVKGN PLYTLKNGKE VLSENIAIAE VRDNIIYLTG QEQTIEIRNG
SEVVVKENDV IKAGETVGTF DPFADPILAE YDGFVRFEDI LPGTTLKEEA DEETGVVEKR
ISDAHFDKMQ PRIFISDESG NTVGEDSYFL PGGAQLLVEE GQEIKAGAIL AKIAKESVKT
KDITGGLPRV SELLEARRPK SPAVLAAIAG VVTIKKGLLK GKRTIMVRDE YGHDVKHLVP
IGKRMLVRDG DTVKAGEPLC DGSFDPHDIL NILGENALQN YLMKEIKEVY DAQGVTINDK
HVGIIVRQML RKVKIVSVGD TKFIFDQQID KYRFHEENKR VKEEGGQPAV ARPMFQGITK
AALNIDSFIS AASFQETTKV LTNAAIAGSS DELRGLKENV IIGHLIPAGT GMKQYRDIKL
FDKNKSDLDI QMNEILERRR LEAEAAQALE EKELIEEENF LDDL
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