| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2401 |
|---|
| Symbol | |
|---|
| ID | 2740703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 2426646 |
|---|
| End bp | 2427782 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637161292 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_973000 |
|---|
| Protein GI | 42527902 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.278357 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAA GAAAAATTTT GGTTACCGGT TCACTCGGAC AGATCGGAAG TGAATTGGTT
ATGTTTTTAA GAAAAGAGTA CGGAAACGAC AATGTTATAG CTTCCGATAT CGAAAAAAAA
GATGTACCCA AGGTTATCGG AAGCGGTCCC TTTGAAAAGC TCGATGTCCT TGACGGCAAA
AAAACTCTTG AGGTTTGCAA AAAATATAAG GTCAACACGA TCATCCACCT TGCAGCCCTT
CTTTCAGCCG TTGCCGAAAA AAATCCTCAA TTAGCCTATC AGATTAACCT TACAGGTTTA
CACAATATGT TGGAACTTTC ACGAGAACAA AAATATTCTC TTTTTGTACC CAGCTCAATC
GCAGCCTTCG GCCCCTCGAC CCCTGCCGAT AAGACTCCGC AGGATACAAT TCAGAGGCCT
ACCTCAATGT ACGGTGTTAC AAAGGTTGCC GGAGAACTTT TGTGCGATTA CTATCACCAA
AAATTCGGCG TAGACACAAG AGGTGTACGC TTCCCCGGCC TTATCTCCTA TGAGGCCCTC
CCCGGCGGCG GAACAACCGA CTATGCCGTT CATATCTACT ATGAAGCCTT AAAAAAAGGA
GCCTATACTT CCTTTATCAA AAAAGGAACC CTTATGGACA TGATGTACAT GCCCGATGCA
TTAAACGCTA TCTTTAAACT TCTTGAAGCA GACCCTGCAA AATTAAAACA CAGAAACGCC
TTTAATATCA CGGCTATGAG CTTTGCTCCC GAAACGATAG CTGCAGAAAT CAAAAAGCAT
ATACCCAAAT TTAAGATGAG CTATGATGTC GATCCCGTAC GTCAGGCTAT AGCAGATTCT
TGGCCTAACT CCCTCGATGA TTCTTGTGCC AAAAAAGAAT GGGGTTGGAA GCCCAAGTAC
AACCTTGAAA GCATGACAAA GGATATGCTC GAAAAATTGA GCGAAAAACT CGGAATCGAG
CTTCCGAATG CAAAACCTGC CGCAGTAAAG GTAAGCACAG CTAAGGCTCC TGCCGCTAAA
AAACCGGCAA AGTCTGCGAA GCCTACTAAA ACAGTGAAGC CGGCAGAAAA GGCTCCCAAG
GCAGCAGCAA AGAAACCGGC AGCCAAACCT TCTAAGGGAA CTGAAAAAAA GAAGTAA
|
|---|
| Protein sequence | MTKRKILVTG SLGQIGSELV MFLRKEYGND NVIASDIEKK DVPKVIGSGP FEKLDVLDGK
KTLEVCKKYK VNTIIHLAAL LSAVAEKNPQ LAYQINLTGL HNMLELSREQ KYSLFVPSSI
AAFGPSTPAD KTPQDTIQRP TSMYGVTKVA GELLCDYYHQ KFGVDTRGVR FPGLISYEAL
PGGGTTDYAV HIYYEALKKG AYTSFIKKGT LMDMMYMPDA LNAIFKLLEA DPAKLKHRNA
FNITAMSFAP ETIAAEIKKH IPKFKMSYDV DPVRQAIADS WPNSLDDSCA KKEWGWKPKY
NLESMTKDML EKLSEKLGIE LPNAKPAAVK VSTAKAPAAK KPAKSAKPTK TVKPAEKAPK
AAAKKPAAKP SKGTEKKK
|
|---|
| |