Gene TDE2389 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE2389 
SymbolcobD 
ID2740691 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp2418438 
End bp2419511 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content37% 
IMG OID637161280 
Productcobalamin biosynthesis protein CobD 
Protein accessionNP_972988 
Protein GI42527890 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1270] Cobalamin biosynthesis protein CobD/CbiB 
TIGRFAM ID[TIGR00380] cobalamin biosynthesis protein CobD 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTTTA ATTTTTTAAG CTTTTCCGAT TTTGTTTTTT CACACATTAA TTTTTTTATT 
TTATTCTGTG CAATAATTCT TGATTTTATT TTGGGCGATC CTTATTCTTT TCCTCATCCC 
GTAAAATTTA TCGGTAGCCT TATAAAAAAA GAAAAAGTCC TTGCACGGTT TTGTTTTAGT 
TCTCCGAGAG GTTTAAAGTT TGCCGGTTTT TTGATTGTCA TTTTCAATGT TAGTCTCAGC 
TTTTGTCTTG TTTTTTTCTT TTTAAAATTA TTATATCCTT ACAAGATTTT ATACTTTGTT 
TTTTCGGTAT GGATCAGTTA TACATGTCTT GCAGCCCGCT GTCTTCAAAA AGAATCTATA 
AAAGTTTTTA CGGCCTTGCA GATGAGTCTT GAAGAGGGAA GAAAGCAGAT TGCAAATATT 
GTAGGCAGGG ATGCCGAGCC TTTGGATGAA AAGGGAGTAA GCCGTGCCTG TGTTGAGACC 
ATAGCCGAGA ATACAAGTGA CGGGGTTATA GCTCCATTGT TCTTTATGAT GCTTTTAGGC 
CCGGCAGGCG GTATAGCTTA TAAGGCTGTA AATACCATGG ATTCTATGCT CGGCTATAAA 
AATGAAAAAT ATGCCGACTT GGGATTTTTT CCGGCAAAGG TTGACGATAT TGTAAACTAT 
ATTCCGGCCC GCCTTTCTGC CTTGCTTATT CTTGCAGGTT CTTTTTTTTG TAAATTGCGA 
AGGCCGGCGC AAGAGGGTTC ACAAAAAAGA ATTTCAAACA AAATAATTCC GAAACTAGCG 
ACAATAAAAA GAGGTTTTAA GATTTGGCGG CGGGATTGCA GAAAACATTC AAGCCCCAAT 
TCCGCTCATC CTGAAAGCGC TGCTGCCGGT CTTTTAGGTT TAAAACTGGG AGGTCCGAAC 
TATTACGGTG GAGAGCTTGT CGAAAAGCCC TTTATAGGGG ACGAGGTTTT TGAAATTGAA 
GATGAAGATA TAAAAAGATG CATACAGTTG ATGTATGCAT CCGAGATTTT TATGTTTGGG 
CTTTATGCTT TCTTATTTTT CGGGAATGTC TTTTCGGTTT TTAGCTATTT TTGA
 
Protein sequence
MNFNFLSFSD FVFSHINFFI LFCAIILDFI LGDPYSFPHP VKFIGSLIKK EKVLARFCFS 
SPRGLKFAGF LIVIFNVSLS FCLVFFFLKL LYPYKILYFV FSVWISYTCL AARCLQKESI 
KVFTALQMSL EEGRKQIANI VGRDAEPLDE KGVSRACVET IAENTSDGVI APLFFMMLLG 
PAGGIAYKAV NTMDSMLGYK NEKYADLGFF PAKVDDIVNY IPARLSALLI LAGSFFCKLR 
RPAQEGSQKR ISNKIIPKLA TIKRGFKIWR RDCRKHSSPN SAHPESAAAG LLGLKLGGPN 
YYGGELVEKP FIGDEVFEIE DEDIKRCIQL MYASEIFMFG LYAFLFFGNV FSVFSYF