Gene TDE2342 details

Gene Information

• Locus tag: TDE2342
• Symbol: dxr
• ID: 2739437
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: -
• Start bp: 2379328
• End bp: 2380473
• Gene Length: 1146 bp
• Protein Length: 381 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637161233
• Product: 1-deoxy-D-xylulose 5-phosphate reductoisomerase
• Protein accession: NP_972941
• Protein GI: 42527843
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase
• TIGRFAM ID: [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0179153
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGAAGAA AAAGGGTTGT CGTTCTCGGT GCCGGAGGCT CAATCGGAAA AAACAGTCTG 
GAAATAATAA GAAGGTTTCC CGATAGGTTT GAACTTGCAG GTTTTTCGGT TCATTCGAAT 
TCGGGCTTTG CAAAAACTCT TCTAGCCGAA TTTACTGATG CACAATTTGT TTCTACAAAA 
AAAAAGAATT CTAATTTAAA ACACGAGATA GATGAGGAAG CTGTTAGACG ACTGATTGAA 
AAATCAAAGG CCGACATTGT TATAAACGGT ATAGCGGGTT CGGCAGGCTT AAAGGCCTCG 
GTAGAAGTTA TAAAAAGCGG CTTGGATTTG GCTCTTGCAA ATAAAGAAAC TATAGTGGAA 
GCAGGGGAGC TGATTTTTCA AGATGCCGAA AAGTCGGGCA GTACAATAAT TCCCGTCGAT 
TCGGAACACG CTGCAATTTT TCAGCTTATA AATGCCCACA AAAAAGGAAA TATCGAAAAG 
ATTATAATTA CCGCCTCAGG AGGCCCCTTT TTAAATACGC CGAGAGAAAA GCTTAGCACA 
ATTAAGCTTG AAGATGCCTT AAAGCATCCG ACATGGAAGA TGGGCGGAAA GATTTCGATA 
GATTCGGCTT CTCTTGCAAA TAAGGCCTTG GAAGTGATTG AGGCCGTAAA GCTCTTTTCT 
TTTCCGCCCG AAAAAATCGA AGTTACGGTC CATCCTCAAA GTATAATCCA TTCGATGGTA 
CAGTGTAAAA ACGGAGAGAT ATTTGCTCAA GCCTCTCCTC CCGATATGAA AAATCCTATT 
TTAAATGCTT TAAGTTTTCC GAAGATGCCT GAAAGCTTTT TAAAGCCCTT GGATTTTTCT 
CAAATTATAA AGTTGGAATT TATGCCTCCC AGAACAGATG ATTTTCCCAT GCTGGCTTTG 
GGCTTTGAGG CGGCTGGAAA AGGTGGCGCC TATCCCATAG CCTTTAATGT TGCAAATGAA 
GAAGCCGTTG ATGCCTTTAT CAAAGGAAAA ATAGGCTTTA CGGATTTAGC CGATATTACG 
CAAGAAGTTT TAAATTCGGA TTGGACTATG AAACCTTCTT CTTATGAAGA AGTTTATGAC 
TATGAAAACA GAGCAAGAGC GATCGCTTTG GCAAGGATAC TTGACAGAGT AAACGGCTTG 
CAATAA 

 

Protein sequence

MGRKRVVVLG AGGSIGKNSL EIIRRFPDRF ELAGFSVHSN SGFAKTLLAE FTDAQFVSTK 
KKNSNLKHEI DEEAVRRLIE KSKADIVING IAGSAGLKAS VEVIKSGLDL ALANKETIVE 
AGELIFQDAE KSGSTIIPVD SEHAAIFQLI NAHKKGNIEK IIITASGGPF LNTPREKLST 
IKLEDALKHP TWKMGGKISI DSASLANKAL EVIEAVKLFS FPPEKIEVTV HPQSIIHSMV 
QCKNGEIFAQ ASPPDMKNPI LNALSFPKMP ESFLKPLDFS QIIKLEFMPP RTDDFPMLAL 
GFEAAGKGGA YPIAFNVANE EAVDAFIKGK IGFTDLADIT QEVLNSDWTM KPSSYEEVYD 
YENRARAIAL ARILDRVNGL Q