Gene TDE2317 details

Gene Information

• Locus tag: TDE2317
• Symbol: hlyIII
• ID: 2739412
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: -
• Start bp: 2354208
• End bp: 2354861
• Gene Length: 654 bp
• Protein Length: 217 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637161209
• Product: hemolysin III
• Protein accession: NP_972917
• Protein GI: 42527819
• COG category: [R] General function prediction only
• COG ID: [COG1272] Predicted membrane protein, hemolysin III homolog
• TIGRFAM ID: [TIGR01065] channel protein, hemolysin III family

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.177004
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGAAG AAAAAATTAA ACGCAGATAT TCTATAGGTG AAGAAATTGC AAATGCCGTA 
ACTCACGGCA TAGGGGTAGG TCTTTCGATT GCAGCCCTCG TGCTTTTAGT TATAAGGGCT 
GCCCGTTATG CTCCGCCGGA TTTAAAGGCC GGTTACGTAG TAGGCTTTGC CATTTTCGGA 
GCTTCCTTAA TAATCCTCTA TCTTTTTTCG ACCCTATACC ATGCTCTTCC GCTAAAGGCA 
AAAAAGGTAT TCGGAATCTT CGATCACTGT TCAATCTACA TACTGATAGC AGGAACCTAC 
ACGGCCTACT GCCTTTCGGC CCTTCACGGA GCTGTCGGCT GGACAATCTT CGGTATTATC 
TGGGGATTGG CTGTCCTGGG CATAGTTTTA TACTCGATAT TCGGAAGCAG GGCAAGGATT 
TTGTCTGTTA TTACCTATAT CCCCATGGGT TGGCTCATCA TCTTTGCGGC AAAGCCCTTA 
AAAGAACAGC TGCCGCTTTT AAGCTTTAAG TTTTTAATTA TAGGCGGAAT TATTTATACT 
GCCGGTTGTA TTTTTTATGC AATGAAGAAG GTAAAATGGG CACACAGCAT CTGGCACCTC 
TTTGTTATAG GCGGGAGTAT AATGCATTTT TTTTCGCTTT ATTACAGTCT TTAA 

 

Protein sequence

MKEEKIKRRY SIGEEIANAV THGIGVGLSI AALVLLVIRA ARYAPPDLKA GYVVGFAIFG 
ASLIILYLFS TLYHALPLKA KKVFGIFDHC SIYILIAGTY TAYCLSALHG AVGWTIFGII 
WGLAVLGIVL YSIFGSRARI LSVITYIPMG WLIIFAAKPL KEQLPLLSFK FLIIGGIIYT 
AGCIFYAMKK VKWAHSIWHL FVIGGSIMHF FSLYYSL