| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2289 |
|---|
| Symbol | |
|---|
| ID | 2740254 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 2325904 |
|---|
| End bp | 2327556 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637161178 |
|---|
| Product | phosphoribulokinase/uridine kinase family protein |
|---|
| Protein accession | NP_972889 |
|---|
| Protein GI | 42527791 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0572] Uridine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0142692 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTCAT TTAAAATAAC TTTTCCTGAC GGAACTCAAA AAGAATTTGT TAATCCGGTG
TCGGCGCGTG AGCTGGTACA ATATTTTCCG GCCTGCCCTG CTCCTATAGT AGGCATAAAG
GTAAACAATT TGGTAGTACC CTTAAATAAA ACCATCGATG TACAATCCAA TATAGAACCG
GTAACCTTAG CCGACCGAGA AGGCTCAAAT TTTTACCGAA GAACTCTCTG CCTGATTTTA
GCTGCTGCAG CAAAAGAACT CTACCCCGGC TTAAGGCTTT TAATGGGACA CAGCCTGGAT
TACGGCTATT ATTACACCCT TGAAGGAAAA AATTCAAGTA AGGTGGATTT TAAGGCTATA
AAGGCAAAAA TGGATGAAAT GGTAGCTCAA GACATGCCTA TCGATACCCG CTGGCTTTCC
TACGAGGAAG CCTTGGAAAA ATTCGAACAC TCAAATCAAC CCGAAACCCA TAGACTTTTA
AACTACACGA GTAAACCCCG AATTTTAATA AACCGTTTAG GCAGCTATGA AGATCTCTAT
TTTCAACCCC TTATGGATAG AATAGGTGAA GTCAAGGTCT TTGATGTAAT GCCCTATGAA
GACGGCTTTT TACTCAGGTT TCCGAGGACA TCATCTCCTA CAAAGCTCTC GGAATTTAAA
GACATTCCCC ATCTTTTTGA AATTTATAAA GAATATAAAC AATGGGGAAA ACTTGTAGGC
GTTTCATCGG TGGGTCAGTT GAACGACTTA ATTACCTCAA GAAAAATAAA AGACTATGTA
GAAATTACCG AGATACTTCA AAACAATAAA CTTGCCGAAA TAGCAAAAAA AATAACGGCT
AAAAAAACCG CAAGGGTAAT ACTGATAGCA GGCCCTTCAA GTTCCGGAAA AACCACTTCG
GCTAAAAAAC TTTCAATGCA GCTTAAGGTT CTTGGGTATG TACCTAAGGT TATAAGCCTT
GACGATTTTT ATCTGGGTAT TGCTAAAGCA CCGAAAAAAG AAGACGGAAG GCCCGACTTT
GAATGTGTTG AGGCTCTGGA CATTGAGCTC TTAAACGATG TCCTTCTCCG TCTATTCAAT
GGTGAAACAG TCGAAATGCC TTCCTACGAT TTTAAGGTAA GTGCCCGCAG ACCTGAAGGT
AAGATGTTTA CCCCTGAACA AAACACAATC TTTATACTTG AAGGAATCCA TGCTCTGAAC
AATAAGCTTA CGGCAAAAAT AGACGAGTCA TTAAAATTTA AGGTCTACCT TTCGGCTCTC
ACCCAGCTTA ATTTGGATGA CCATAACCGC ATCCCTACAT CGGATAACAG ACTTATAAGA
CGCATAGTCC GAGATGCCCA GTTTAGAGGA AGCCCTGCAG CAAGAACAAT AGGAATGTGG
GGCGACGTAA GAAGCGGAGA ATCAAAATAT ATTTTCCCAT TCCAAGGAAA TGCCGATGCT
GTCTTTAACA CGGCCCTGGA CTATGAGCTT TCAGTCTTAA AGGTTTATGC AGAACCGCTT
TTAAAGGCGG TAAAGCCGAA CCAAAAGGAA TACAACGAAG CGTCGAGGCT GTTAACCTTT
TTAGGAAACT TTCTACCGCT TCCGGCCAGC TTTGTACACG GACAATCCAT ATTGCGCGAA
TTTATCGGAG ACAGCGACTT TTCGTACAGC TAA
|
|---|
| Protein sequence | MASFKITFPD GTQKEFVNPV SARELVQYFP ACPAPIVGIK VNNLVVPLNK TIDVQSNIEP
VTLADREGSN FYRRTLCLIL AAAAKELYPG LRLLMGHSLD YGYYYTLEGK NSSKVDFKAI
KAKMDEMVAQ DMPIDTRWLS YEEALEKFEH SNQPETHRLL NYTSKPRILI NRLGSYEDLY
FQPLMDRIGE VKVFDVMPYE DGFLLRFPRT SSPTKLSEFK DIPHLFEIYK EYKQWGKLVG
VSSVGQLNDL ITSRKIKDYV EITEILQNNK LAEIAKKITA KKTARVILIA GPSSSGKTTS
AKKLSMQLKV LGYVPKVISL DDFYLGIAKA PKKEDGRPDF ECVEALDIEL LNDVLLRLFN
GETVEMPSYD FKVSARRPEG KMFTPEQNTI FILEGIHALN NKLTAKIDES LKFKVYLSAL
TQLNLDDHNR IPTSDNRLIR RIVRDAQFRG SPAARTIGMW GDVRSGESKY IFPFQGNADA
VFNTALDYEL SVLKVYAEPL LKAVKPNQKE YNEASRLLTF LGNFLPLPAS FVHGQSILRE
FIGDSDFSYS
|
|---|
| |