| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2119 |
|---|
| Symbol | grdB-2 |
|---|
| ID | 2739378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | - |
|---|
| Start bp | 2151488 |
|---|
| End bp | 2152783 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637161009 |
|---|
| Product | glycine reductase complex selenoprotein GrdB2 |
|---|
| Protein accession | NP_972720 |
|---|
| Protein GI | 42527622 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01917] glycine reductase, selenoprotein B
[TIGR01918] selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAG TAATTGTTCA TTATATCAAT CAGTTCTTTG CCGGAAAGGG CGGAGAAGAC
ATGGCTGACT ACAAACCGGA GGTTATTGAC GGAACAGCAG GTCCCGGTAC CGGAATTCAA
GGTGCTTTAG GAGATGCAGG AAAGATCGTC AAGACCATTA TCTGCGGTGA TAACTTTTTT
AACGAGCACG AAGAAGAAGC TGTTGCATTC GTCAAAAAAG TTCTTACAGA TACAAAAGCA
GACCTTCTTA TCGCCGGTCC CGGATTTAAC GCCGGACGAT ACGGTATGGC TTGCGGTAAC
GCAGCAAAGG TTGCCTTTGA GCTTGGAATC CCCGCTATTT CTGGTCTCTA TGAAGAAAAC
CCCGGTTATG ATGTATTCAA AGCCTTTATG TACACAATCA AAACAGGCAA CTCTGCTGTA
AGCATGAGAG AAGCTGTTCC TGCTATCGGA GCTTTGGCTA AAAAACTTTT AAAAGGCGAA
CAAATTTGCT GCCCCGAAAA AGAAGGTCTC TTACCCAGAG GCGTACGCCA AAACTACTTT
GCAGAAGAAA GAGGTGCAAA GAGAGCTGTT GACATGCTCA TCAAGAAGAT TAAGGGTGAA
GCATTCGTAA CCGAATATCC GATGCCCGTA TTCGACAGAG TACCTCCTCA GCCTCCCGTT
AAGGATATCA CCAAGGCAAA GATTGCATTG GTAACCTCAG GCGGTGTTGT ACCCAAGGGT
AACCCCGACC ACATTGAAGC TTCAAATGCT TCACACTACG GCGAATATTC AATCGCAGGT
ATGGCCGCTC TTTCATCAAA AGACAGCGAA ACAGCTCACG GCGGATATGA CCCGACCTAT
TGTAACGCAA ACCCCAACCG AGTTCTTCCG GTAGATGTTT TGCGTGATCT CGAAAAAGAG
GGAAAGATCG GAAAGCTTCA TGACAAGTAC TATACAACGG TAGGAAACGG TACCGCTGTA
AAGCGTGCAA AGAAATTTGC CGAAGAAATT GTTCAAAAAC TTGTAAAAGA TGGAGTGCAG
GCTGTAATTC TTACCTCTAC GTGAGGCACA TGTACTCGTT GCGGTGCAAC GATGGTTAAA
GAAATCGAGA GATTCCTCCC GGTAGTACAT ATTGCAACTG TTGTTCCTAT CTCAAAGACT
GTTGGTGCTA ACAGAATTGT TCCGGCTGTA GCTATTCCTC ACCCGCTCGG TGATCCTAAA
ATGAACGACG CAGATGAGAA AAAACTCCGC CGATCACTTG TTGAAAAAGC ATTAAAAGCT
CTTGAAACAC CTATTTCAGA GCAAACCGTT TTTTAA
|
|---|
| Protein sequence | MSKVIVHYIN QFFAGKGGED MADYKPEVID GTAGPGTGIQ GALGDAGKIV KTIICGDNFF
NEHEEEAVAF VKKVLTDTKA DLLIAGPGFN AGRYGMACGN AAKVAFELGI PAISGLYEEN
PGYDVFKAFM YTIKTGNSAV SMREAVPAIG ALAKKLLKGE QICCPEKEGL LPRGVRQNYF
AEERGAKRAV DMLIKKIKGE AFVTEYPMPV FDRVPPQPPV KDITKAKIAL VTSGGVVPKG
NPDHIEASNA SHYGEYSIAG MAALSSKDSE TAHGGYDPTY CNANPNRVLP VDVLRDLEKE
GKIGKLHDKY YTTVGNGTAV KRAKKFAEEI VQKLVKDGVQ AVILTSTUGT CTRCGATMVK
EIERFLPVVH IATVVPISKT VGANRIVPAV AIPHPLGDPK MNDADEKKLR RSLVEKALKA
LETPISEQTV F
|
|---|
| |