| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2055 |
|---|
| Symbol | hbpB |
|---|
| ID | 2740649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | - |
|---|
| Start bp | 2082648 |
|---|
| End bp | 2083859 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637160946 |
|---|
| Product | hemin-binding protein B |
|---|
| Protein accession | NP_972657 |
|---|
| Protein GI | 42527559 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3443] Predicted periplasmic or secreted protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.044725 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTACGA AAAATTTCGG TGCAAAACTT GTATTAGTTT TGATGGTTCT TGCGGTTACT
TTTACTGCAT GTAAGTCGAT GCCTAACACA ATCGGAGGCA TGAAAATTGA ACCCGGTAAA
GAACTTGCCG CATGGAAAGG TGAATGGGTT TCGCTGGATT CCGCAAAAAA TGATCCTTCT
TTAAATCCTG TATACAAAGA AGCGGCCGCC AAAATGGAAA ACTATACCGT TGAAGGTTTC
AAATTGGCTG TTGAAGGAAT GTATAGAACA TCATTTTCAA AGATAAAATT TGACGGAACA
AACACTGTTG TGTTTACCGT AAAAGATGCT GATGGAAAAG AAAAAGAAAT TTCTTCCGAG
TATGTTTACA AGGGAAAGGT GCCTGTTATA GGTTATGACG GATATTACTG GGAAACTTTT
GAAGCCGTAA AAAATGTACG CGGCCTTACT ATGGCAAAAT ATATTATCTG TTTTCCCCCG
CATCAAGATT CCGAAGGGGG ACTGCTCCAT TGGCATGTAA GAACAGGCGG ATCCGGTATT
GACGCATTGG TAAAAGCAGA TACTATGTGG TGGCCTACCT ATGTGTCTGC TTCAATGACA
AAAGAAGAAC TTGTAAAGAA TTTTAAAGAT ACCATAGGAG CTGTTGCGGG CATGTTCCCA
AAATCTCCCT TTGAGCCTTA TGCAAAAGAA GGAAAATGGA TGAATAGCTC TTTAATTTAT
GACAACACAA GTGCTGAGGT TAATGCCGCT TATAACAAAA TCATTAAAGA ATTTGCCGGT
AAAAATCCTA AGGGCGGAGA TTTTACAAAA GCTGAAATTA TTGCCGAAAT GAAAAAAGTA
TACGGCACGA CAGATCTTTA TACTCATATC GAATTTGTTA CCGAAGACGG TAAGAACGAA
TTTGTAGTCT ATAAGGACGG AAAAGAAATT CATCGAGCTG CTTATAAGAG AACTGCTGAA
AATGCCTCCA AGCCCGGATT GCTTGCTGTG GTAACTGATA AAAAAGATGC AGGAATGTTT
AAGACAATTT CTCTTACGAG TGCAGGAGGA AATCCTTTAC ATTTCCATTT TTGGTATGGT
ATGAATGATG CCGATTTTTC CAAAATTAAA GAGAAGCCTA CATGTATACC TGCAAATACA
CCAAACAAAA TGATTGCAGA GAGAGTTGAA AAATCTTGCC GCAAGATTTT AAAAGGTATT
GTTGAAAAAT AA
|
|---|
| Protein sequence | MSTKNFGAKL VLVLMVLAVT FTACKSMPNT IGGMKIEPGK ELAAWKGEWV SLDSAKNDPS
LNPVYKEAAA KMENYTVEGF KLAVEGMYRT SFSKIKFDGT NTVVFTVKDA DGKEKEISSE
YVYKGKVPVI GYDGYYWETF EAVKNVRGLT MAKYIICFPP HQDSEGGLLH WHVRTGGSGI
DALVKADTMW WPTYVSASMT KEELVKNFKD TIGAVAGMFP KSPFEPYAKE GKWMNSSLIY
DNTSAEVNAA YNKIIKEFAG KNPKGGDFTK AEIIAEMKKV YGTTDLYTHI EFVTEDGKNE
FVVYKDGKEI HRAAYKRTAE NASKPGLLAV VTDKKDAGMF KTISLTSAGG NPLHFHFWYG
MNDADFSKIK EKPTCIPANT PNKMIAERVE KSCRKILKGI VEK
|
|---|
| |