| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2028 |
|---|
| Symbol | |
|---|
| ID | 2740375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 2053063 |
|---|
| End bp | 2057079 |
|---|
| Gene Length | 4017 bp |
|---|
| Protein Length | 1338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637160918 |
|---|
| Product | OmpA family protein |
|---|
| Protein accession | NP_972631 |
|---|
| Protein GI | 42527533 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00257067 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGGAG GGGAAGAAAA GCCCGCGCTG CAATCCCCCT CGGTTGCCGG AGGACAAGTC
TCTGTTACGG GAGGGCCTTT CGGGGACACG GTGCCTGGCA GCCTTGCCGT AAACCCTGCT
TTAGGCGGGG CAGAACAAAG GCCTATTCTC GATGTTTCCT ATTTTTTAAT TGCGGGCCTC
AGCGAAGAAA AAGGCTTGGG TCATGCAGTC AATGCAGGCC TCCTCTACCC CTTTAGATGG
GGAAACCTTG CAGGAAGCCT TCACTTTTTA AATTCGGAAT TTAATTCCTT AAAACTTGGA
ACGATGGGAG GCTTACGCTT TTCATATTCA AAGGATTTAA CCGATAAATT TTTAATAGGT
GTCGGAGCCT ACGCCGATAT CGGAAAGGAC TGGGGACTCG GGCTCGATAT CGGAGCTCTT
TATATGTTCG GAGACCTCGG ATTTTTAAAA AACTCCAAGC TGGGCGTTTC GATAACGGGA
CTCGGCAAAA CCTATAACCC AAAAGCGACA GGCATAAAGG GCGGAGCTTC AAGCGGCAGT
CCTGCAATAC TCACTCCGAG GCTAGGCTTT GCTTCAACCT TGGTAGATAT TGACGGCTTT
CAACTCGGAA TGCACGCAGA TCTCTCGGCT CCCTTTTTCC AAAATCTTAT TTTTAATACG
GGACTTCACA TGCTCATGGC CGATATGATA TCCTTTAAAA CGGGCTTTGT CATCAACACG
CTTGAAGCAA TTAATAAAAA ACAAACATTT ATCCCCTCCT TCAACATAGG AGTAAATATA
AAGATTAAAT CTAAAGGGGC AGATGATTCC TTTTTAAAGA AAAACGGCTG GGAAGAAAAC
GAAATCCGCC CCGAGTTTGC AGCAAAACCA TTCCATAACG GAATTTGGGC ATTCGGCGGA
GGTGTAAATG TTCACTTCGG TCTAAAGGAC AACGAAGGGC CTAAGATACA AGCCGAAATG
CCCGAAAACG GCACACTGTA CTTTTCTCCC AATAATGACG GAGAAAACGA TGCAATGGAA
ATCCCCTTAA AAATTACCGA CAAAAGATAT ATAACGGCTT GGAGCTGCGA AATAAAGGAT
GAAAAAGGAA ACACTGTCCG CACAATTTCG AACAAAACTC CTTTACGCGA AATGAAAGAC
GCAGCCTCAT TTTTTAAACT CTTAGGAAAA TCCAAAGAAG GCGTTGAAGT GCCGGATACC
CTTCGTTGGG ACGGACGCAC CGATTCGGGA GAAATAGCCC CCGACGGAAA ATACAGCTTT
GTAATAAGAG CCGAAGACGA TAATAAAAAT AAATCGGAAT CTCAAGTTTA CACAGCCTAT
GTGGATAAAA CTCCTCCCGC TCTTACATTT AATAAACCTC AAAACCAAGA AGCCCTCATC
TTCAGTCCTG ACGGGGACGG AAACAAGGAT GTCTTTGTTT TCGACAATAA GGGTTCAAAT
GAAGACCTTT GGACGGCAAG CATAAGCGAT GCCCAAGGCA AGGTCGTAAA AAAAATAGAG
GTTAAAAATA ATGAACTTAC TCCTTTAAGC TGGGACGGAA AAGACGATTC GGGAATTTTT
GTGCCCGACG GAGTTTACAG CTATAAAATC GAATCTACCG ACAGGGCAAA AAATAAAACC
GTATCAAGCC TTTCAAACAT CATTGTAGAT ACCTACAAGC CCTCGATCAA CATAAGTATA
GATAAAAATG CCTTTTCGCC GGTAAGCAGC TCAAACAATA AGATAAGCTT TATTCCTTCT
ATTCCGATTA CCAAGGGACT TGAAGAATGG AAGATTGAAG TAAAAAATCA AACAGGTGCA
ACCGTAAAAA CATATATGGG AAGCCCCTCA AAGATAGAAA CCAAAAGTTT TGACGGAAAG
GACGAAACTG GGAAGCTCTT GCCTGAGGGT ACATACAAGG CCTTTATTTC CGCAAGGTAT
ATAAACGGGC ATAAGCCTTC AACTCAAACG CCCTCTTTTA ACTTGGACAT TACACCGCCC
AAGGCTGAAG CAAGTACAAA CCAAAAACTA TTTTCTCCCG ACGGCGACGG AGAACTGGAC
AGCATTATCT TTACTCACAA GGAAGAAAAA CCCGGCAGAT GGACGGCGGA AATCTATAAA
GCCTCAAGCG GAAATGCAAT CAGCGGTACG CCTATTTTTA CAAGCAGCCT TGGGGACAAG
CTGCCTCCTC AATTTGAATG GAACGGAAGA AAGACCGACG GCAGCTTTGC CGAAGACGGT
AAGTACATCT ATGTATTAAG AGGAATTGAT GAGGCTCAAA ACGAAGCCCT CTCCAATCCC
GTGCTTGTAG AGCTCAATAC CGAAAAAGCG GATATAATTC TCCAATCAAA TTATACGGCC
TTTTCTCCCA ATAATGACGG GGTAAAGGAC AGCATGGAAT TCTATCCTGT AGTAAAATCA
AAAACAGCTG TCAGCTCATT TACTCTTAAC ATTAAGGACT CAAAGGGCAA ACTTGTTAAA
GCCTACAAGG GCAATACTCC TCCAAAGAAA ATAACTTGGA ACGGAGAACT TGATAAAATT
TCCTCTTCAG AAAAAAATGG AACAGCCTCT GAAGGCGTTC CTGACGGAAT ATACTCTGCG
GAATTTGAAG TAGAGCTTGC AAACAAAAAC AAGGCAAAAT CAATTATTTC ATCGATAACG
ATAGACACCG TTTATCCTGA AATTCAAATT TCCGCTCCCT ATTTGGCCTT TTCTCCCGTT
GAAGGAAACA ACAAGCCAAA CCTTCCCATA GGTCAAATTT CTTCTTCCGA AAAAGAATGG
GTAGGACGCT TTGTCGATTC TAAAAATAAA ACTGTAAAAA CCCTAAAATG GAAAAACAAG
GCAGATAATT TTATATGGGA AGCAGATGAC GATAAGGGCA ATAAGGCCCC CGATGAAAAG
TATACCTATG TCGTAGAGGC TGAAGACGAG GCAGGAAACA AGACCGTTCA AAAACTTGAA
GGAATCATCG TGGACCGCCG TCAAGCCAAG GGTTATATAA CCGCCGAACA CAAGGTATTT
TCTCCTACAG GTAACGGAAT AAAAGATGTT CAAAATATTT CGGTGCTTAC AAATATTGAT
GCCGAAATAG ACAACTGGAA TATTCAGATT TCGGATGTGG AAAGCGGTAA GGTTTTTGCC
GAATGGACTT CCAAAAAGGA CGGAAAACTT CTTAAAAAAC TTGTATGGGA CGGCAAGAGC
GGAAACTCAA AGGCTCCCGA CGGCAGGTAT ATGGCAACTA TGTACATAGA GTACAAAAAA
GGCGATATCG TAACAGCCTT TACCGAAGAC TTTATCCTTT CAACTCAGGC GCCTAAGATC
GGCGTAAGCA CAAAGCCTAA ATATTTCAGC CCCGATAATG ACGGAACCGA TGATGACCTC
TACATAAGCC TAAAAGCCGA TTCAAAGGCC GGCATCGAAA ACTGGAAGTT TGAAATCACC
GAACCGGAAG AAAACGGCGG AAAGCTTTTC TGGAAAACCG GCGGAAAAGA AAAGATAACT
AATGAACTTA TCTGGGACGG CCGCTCTCTT TCAGGAGAAA CTGTACAGTC TGCAACGGAT
TATCCTTTTA CCTTTACGGT AACCGACAAG GTAGGCCTCA CCTCGGTTTA CAGGGGTTAC
ATTCCGGTAG ATATTCTTGT TATCAGGGAC GGGGATAAAC TTAAAATAGC CGTACCTTCG
ATTATATTTA GGGCAAATGC AGCCGACTTT GAAGGCCTCG ATAAGGCCAT CGTCGATAAG
AATAAAAGTA TTTTAAAACG TATTGCCGTT ATCCTCAATA AATTCCCGGA ATATCAAGTT
CAGGTTGAAG GACATGCCAA TACTACGACA GGTACTGAAA AAGAAGAAAC AACAGCCCTC
CTCCCCCTAT CAAAACAAAG GGCAGAGGCT GTCCGTCAAT TCCTTATAAA GGAAGGCCTT
AAAAGCTCCC GTCTTTCTTC TATAGGAATG GGAAGCTCCA AACCCGTTGC CTCTCTTAAT
GACAGGGACA ATTGGTGGAA AAACCGCCGA GTCGAATTTA TTTTGATTAA GCAGTAA
|
|---|
| Protein sequence | MPGGEEKPAL QSPSVAGGQV SVTGGPFGDT VPGSLAVNPA LGGAEQRPIL DVSYFLIAGL
SEEKGLGHAV NAGLLYPFRW GNLAGSLHFL NSEFNSLKLG TMGGLRFSYS KDLTDKFLIG
VGAYADIGKD WGLGLDIGAL YMFGDLGFLK NSKLGVSITG LGKTYNPKAT GIKGGASSGS
PAILTPRLGF ASTLVDIDGF QLGMHADLSA PFFQNLIFNT GLHMLMADMI SFKTGFVINT
LEAINKKQTF IPSFNIGVNI KIKSKGADDS FLKKNGWEEN EIRPEFAAKP FHNGIWAFGG
GVNVHFGLKD NEGPKIQAEM PENGTLYFSP NNDGENDAME IPLKITDKRY ITAWSCEIKD
EKGNTVRTIS NKTPLREMKD AASFFKLLGK SKEGVEVPDT LRWDGRTDSG EIAPDGKYSF
VIRAEDDNKN KSESQVYTAY VDKTPPALTF NKPQNQEALI FSPDGDGNKD VFVFDNKGSN
EDLWTASISD AQGKVVKKIE VKNNELTPLS WDGKDDSGIF VPDGVYSYKI ESTDRAKNKT
VSSLSNIIVD TYKPSINISI DKNAFSPVSS SNNKISFIPS IPITKGLEEW KIEVKNQTGA
TVKTYMGSPS KIETKSFDGK DETGKLLPEG TYKAFISARY INGHKPSTQT PSFNLDITPP
KAEASTNQKL FSPDGDGELD SIIFTHKEEK PGRWTAEIYK ASSGNAISGT PIFTSSLGDK
LPPQFEWNGR KTDGSFAEDG KYIYVLRGID EAQNEALSNP VLVELNTEKA DIILQSNYTA
FSPNNDGVKD SMEFYPVVKS KTAVSSFTLN IKDSKGKLVK AYKGNTPPKK ITWNGELDKI
SSSEKNGTAS EGVPDGIYSA EFEVELANKN KAKSIISSIT IDTVYPEIQI SAPYLAFSPV
EGNNKPNLPI GQISSSEKEW VGRFVDSKNK TVKTLKWKNK ADNFIWEADD DKGNKAPDEK
YTYVVEAEDE AGNKTVQKLE GIIVDRRQAK GYITAEHKVF SPTGNGIKDV QNISVLTNID
AEIDNWNIQI SDVESGKVFA EWTSKKDGKL LKKLVWDGKS GNSKAPDGRY MATMYIEYKK
GDIVTAFTED FILSTQAPKI GVSTKPKYFS PDNDGTDDDL YISLKADSKA GIENWKFEIT
EPEENGGKLF WKTGGKEKIT NELIWDGRSL SGETVQSATD YPFTFTVTDK VGLTSVYRGY
IPVDILVIRD GDKLKIAVPS IIFRANAADF EGLDKAIVDK NKSILKRIAV ILNKFPEYQV
QVEGHANTTT GTEKEETTAL LPLSKQRAEA VRQFLIKEGL KSSRLSSIGM GSSKPVASLN
DRDNWWKNRR VEFILIKQ
|
|---|
| |