Gene TDE2023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE2023 
Symbol 
ID2740370 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp2049595 
End bp2050704 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content26% 
IMG OID637160913 
ProductTPR domain-containing protein 
Protein accessionNP_972626 
Protein GI42527528 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.000313787 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAA TAATTTTTGT TATTTTAGTG CCAATTGTTT TGTATGAGTT TATTTCTTGT 
AATTCTATTC CAAATAGTGA AATAACGGAG AAAGATAGTT TTATTATATA TCAAATGAAT 
CTTAGTAAAT ATGAAAGACA AATTGAGAAA GACCCCAATA ATTATAAACT CTATTATGTG 
CGAGGTTATT ATTACAGCTT ATCCGGCTAT TATGATTTAG CAATACATGA TATAAACAGA 
TCATTAAAAA TAAATCCTAA TTATGAAGAA TCTATTTTAC TGCGAGGTCT TATTTTTTAT 
GCAATGATGA AATATAATGA AGCTATTGTA GATTTTTCTA GAGTGATAGA ATTAATTCCC 
AATGATCCTA GAGCTTATAA CAATAGATCG TCTTGTTATT TAGAATTTGG TGATTTCGAG 
AAAGCACTTT GTGATATTAA TAGTGCAATA AAATTAGACC CGAAGGATTC TTTGCATTTT 
AAAAATAGAG GAGAGATATT TTATCGTCTG AAAGATTATG ACAATGCTAT TTTAAATTAT 
ACACAAGCAT TAAAATTAAA CCCGAGGGAT TCCGATGCTT ATTTTTCACG AGGTTTGTTT 
TATGAAACGA TAAAAGATTA TAATAGTGCA TTATCCGATT ATTATAAAGC CTTGAAGTTA 
AAATATCGTT CCAACGATAT TTATTTTCAT ATAGGCCTTT CTTGTTATGC TTTAAAAGAA 
TATGATAATG CAATAAATGC TTTTAATAAA TATATTAAGA TTAATAATAC TGATGCTGAG 
GCTTATACAT GGAGAGGTAG TATTTATTTT ATATTGAAAA ATTATGATAA TTCGATAAAA 
GATTTGGATA TGGCTATAAA TTTAGGCGGC AGTAATGAAG TAGTATTTTA TAATAAAGCC 
GTCGCTTTAT ACTCAAAAAA TGAATTGAAT GAGGCCATTG ATTGTTTAGA AGAAGGTATA 
AATTTATTTC CTGATTATTA TGATTTTTAT CAAGTAAAAG CAAAAATTTA TCGAAGTCTG 
TCTGAACAGA CGAAGGATGA ATATCAAAAA GGTATGTTTT TAAAGCTTGC AAATGACTGT 
GAAGTAGTTT ATAATAGTAA AAAAAAATAA
 
Protein sequence
MKKIIFVILV PIVLYEFISC NSIPNSEITE KDSFIIYQMN LSKYERQIEK DPNNYKLYYV 
RGYYYSLSGY YDLAIHDINR SLKINPNYEE SILLRGLIFY AMMKYNEAIV DFSRVIELIP 
NDPRAYNNRS SCYLEFGDFE KALCDINSAI KLDPKDSLHF KNRGEIFYRL KDYDNAILNY 
TQALKLNPRD SDAYFSRGLF YETIKDYNSA LSDYYKALKL KYRSNDIYFH IGLSCYALKE 
YDNAINAFNK YIKINNTDAE AYTWRGSIYF ILKNYDNSIK DLDMAINLGG SNEVVFYNKA 
VALYSKNELN EAIDCLEEGI NLFPDYYDFY QVKAKIYRSL SEQTKDEYQK GMFLKLANDC 
EVVYNSKKK