| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2022 |
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| Symbol | |
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| ID | 2740369 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | - |
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| Start bp | 2044846 |
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| End bp | 2049312 |
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| Gene Length | 4467 bp |
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| Protein Length | 1488 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637160912 |
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| Product | YD repeat-containing protein |
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| Protein accession | NP_972625 |
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| Protein GI | 42527527 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.904557 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATGGA AAATTTACCT TCTTTTTTTG ATTGTATTTG TATTTTTGGT ATGTATTTTG
TTAATTTATA TTCATATGGT GGGTGGTAAA AAAAACTTTA AGGTAACCAG TAAAGAAATG
GAAAAAATGA AAAATAGGAA TTTATTAAAA CAACAAGATA GTTTAACTTC TCGGACAGCG
ATTGAAGCAG AAATCCTTTT TGCGGTTTGT GTAATCAAAA AGCAAGCTCT GACCGGAGGG
AAGAGCCTTG CCCGTGAAAA CAAATACAGC AAAAAGATTG GAGCGAAAAG CGCGGTGCTC
AATTTTGTTT TCTTCGTAAT GCTAAAAAAC AAAATTGAGC AGTCCGCCAA AAGAAACTCA
TTACTGAAAA ACCTTACTGA CAGGACTTTT GAAAATAGGT GGAGCAGATA CAAGGAGTTA
GGCAAAAAAG TACCGCAGGC GTATCGGGTA TACGTCGAGG ACACTTTTTT GCCGTGCGAC
GCAGGAGATG CCCGCATATT TTCAAAAGAA CAAGAGTATA CCACCTATTA CTCTTACGAA
GACGGCTACT ATGATAGAGA AACAAAGGAA TTCTACGGCT TTGCCAAGGT AACAAAAAGA
AGCGAGGGCG GAACCGTACA AGAAACCGAA TATTACAACG ACAAGTATTA TAGAAAAGGC
ATGGTAAAAA AAAGTAAAAC CATATACGGA GGATTTACCT ATAACGAAAA AGAAATAGAA
GTAGATACAT CTCCCCATGC GAGAATAATA AAAGAAGAAG TAATTCAAAG AGAAAAAGAT
AGCCCCTATA GTTACCTAAA AACTTCAAAA CGCTATGTAT ACGATAAATA CGGCAACGTT
ACAAAGCTCT ATGATGAAGG AGACGTAACA AAGGCAAATG ACGACATAAC GGCAGAAATA
ACTTACTGGA AGGGAGGAAG TGAAGAAACC TACTTTAAAG CACACCCTGA AAAAATAGAA
GTAAAAGATA CAAATAATAA ACTCCTACGC AAAAGAGAAG GAAGCTATGA CAGTAAGACG
GGAGCCTTAA CTCAATTAAA CGAGTTTTAT GAAGGAGGCA AATACTTAAA AACCGAAATC
GAATGGACAA AAGAAGGAGC AATAAGAGTC ATAACCGCCC CCACCGGAAA AAGAATTGAG
TACAAATACT TAGACGGCAT ATACCCGATT GAAATAAAAG AAGTAAGCGC AAAAGGAGAT
CAAACTTACA CAAGCACTAT AGAATGGGAC AGCGTCTTAG GCGTAAAGTT AAAGGAAACG
GACAGTGCAA ACAACACCAT GACTTATAAA TATGACGGCT TTGGAAGAGT AACAGAGGTA
CGAAGTCCCT ACGACACAGA CAAAACCCCT TACGCAAAAT ATACATATTT TACTCCAAAA
GACTCCTTTT GGTACACCGT AACTGAAAAC AAAATAAGCA CAAGAAAAGA AGATAAAGCA
GTAATGCGTA CAATCGTAAC CCACGACGGT CTGGGAAGAA TAAACTACAC AGCCAAAGAA
GGAGAAGTAT ACATAGACGG AACCGATTAC CAAACCCAAA CAGGCTGGAA TGTTTCGGGA
GCGGTTTATT ATGATGAAGA CGGAAGAAAA AAAGGAGAAG GACAGCCCGT GTTCTATGGA
GGAGATATAC AAAATGAATT AAGCGGAAGC TCAAGTCAAA TCCTTTTATA TGAAAAATTA
AACGAATTAA AACACCCTAC AAGCTATGAA TATGACGGAC TAGGCCGCGT AATAAAAACA
ACCCTTCCCG ACGGAAACAG TCAAAAAACG GAATACTCGA TAGACGCTTC CTTACAAATA
ACAAAAACAA TAGACCCTAA AGAAAACATA AACATCAGTA AAAAAGATAT AAGAGGAAAC
ATAAAAGAAG TAGAAAGACG TGATAAAAAC AATACCTTAC TAACCAAAGC CCGATACGAA
TATTCGGTAT TAGGAGAAAT GTTAAAAGCC TATGATGCTA AAGACAACTT ATTGGCAGTA
AACTATGACA TGCTTGGACG GCGTATAAGC TTAGAAAGCC TTGATATGGG AAGAAAAGAA
TGGAACTATG ACGATAAAGG CCGATTGGAA TATGAGACGG ATTCAGTCCT GCGCTCAAAA
TTAGCTTCAA TAAAATATGA ATACGACGGA CTGGACAGAA TAATAAAAAT AGACTATCCT
TTTAGTGAAG ATGTAGAATA TGAATACGGA GCAGCGGGAG AAAAAGGAGC GGGAGAAGTA
ATCCGCAAAA AAGATGAAAC GGGAGAGACA ATGTACAGCT ACGGCCTACT AAACGAGGTA
AAGGTAGAAA CACGGACAAT AAAGAGGGGA AGAGAATTTC AAAAACCCGT AACTGCCGTG
TTTAACTATG AAGCCGATTA CTTAGGCCGA ATGCAAAGCA TAAGCTACCC TGACGGAGAA
GTGCTGACTT ACAACTACGA CAAGGGCGGA CAATTAAAAG GAGTTATAGG TAAAAAAGGA
ATAGAAACCT ATAGGTATGT AGACAATATC TTATACGATG AACACGGTCA GAGAGTCTAC
ATCAAATACG GAAACGGAGT AGAAACAAGA TATACTTACG ACCCTGCACG GCGTTGGCTA
AAAGACATAA AGACAGAAAA CAAAGATAAG AATTTGGTAT TCCAAAAAAT AAACTATAAC
TTTGATGCAG TAGGGAATGT AGAAGGCTAT ATAAATACTT CAAGCAAATA TGAAACAAGT
CAAAGCTACA GTTATGACAA TTTGTACCAA CTTATAAAAG CCGAAGGCAC GCACAAACAA
TACGGAGGAA TAAACCCTAA CCCCGATAAC CCGCATCCTT CAAATCCCTT ATACACAAAT
AAATACAGAC AAACCTTTGC CTTCGACATA ATAGGGAACA TGACGAATAA GAGCAGCACC
ACAAACCTTC CCGGAGGCTC AATAGGAACT ACGGATGACA CAAAACTAAA CTATGAACTG
GATTATGAGT ATGACAGTAA ATACGCCCAC CGCTTAATAA GAGCCGGAAC CCGATACTAT
CGCTACGACG CCAACGGCAA CATCACTGCA GAAAAAGACG GAAAGTTCAG CGACAAAGAA
GAGCTTACCT TTACCTACTC CTACTTTGCA GAACATGACG TATACGGCGT AGACTACGGC
TTTGACCTAG AACCCCCTGA AGATGACCCT GCAAACCTAG AAAGCGGAGG CACAACAAGT
ACTACACCTA CAGGAGGCTA CAGAAGAGAT TATACATGGA ATGAACGCAA CCTATTGATA
AAATCAGACG ATAAGTTAAA CACCGTAATA TACCGCTACG GCGATGACGG ACAGAGAGCC
TTAAAGTTTA CTCAACAGAG TAATAGCGAG ACATTGTATT TTAATAACTT TTATTCGGTA
CACCAAGTTG CCCATGAACC TAATCACGAA CATGGATTAC GAGTGAGCAA ACACATTTTT
GTCGGAAACT CAAGATTAGT AACCGCTATG ACGCACGCGG ATAATAATGG AGACACAACG
GAACAAACTG AAAAGCGTTA CTACTACCAC GCAGACCATT TGCAGAGTGC ACAGTTTATA
ACAAATGCTA AAGGAGAGCA GTATGAACAC ATAGAATACA CGCCTTACGG AGAACTCTGG
ATTGAAGAGA CTGCACCGGG TATTGATAAA TTACCGTTCA GGTTTACGGG GAAAGAGATG
GATGAGGAAA CGGGATTATA TTATTACGGT GCACGGTATC TTGACCCAAA GTATAGTAGA
TGGCTTAGTG GGGATCCGGC ACTAAACGAT TACATACCTA AAGCACCCAT TGACGATGAG
GCGAAAAAGC ATAATGAAAA TTTGCCAGGT ATGGGAGGCA TATACAACAC GATAAACTTA
CATGTGTATC ATTATGCCGG GAATAATCCG GTGAAGTATA CCGATCCAGA TGGAAGAGAA
ATTGAAAATC TTGATCCATC TCAAGAAGCA AAACTTTTAG AGAATATTAT CAATGTTGCT
GGTACAGGAT TTTATTTTGA AAATAATAAA CTAAAATTTG ATTCTTCAAG TAAAGCCTCC
GGTAAATATT CACAAACTGC ACGTGATATT TTAATAGCAG GGATAGCCTC TAGTAAGACT
ACCTATGTTT TGCCTGCAAG TCCTGAAAAA ATTCAAGAAT TGCTTCCTGA TGCTTATGGA
GAACTTGGAT TTGCCAGACG TGTTTCGGGT GAACCTGGTA ATACAGTAGG GGTGTATATG
ATTGATGTAC CTACTACACA AGCTGCTATC GATTATTTAA ATAATACATT TAATTGTACT
CCTTCTGAAG CTGATGAATT AGGGTTTATT CACGAAGTGT TGGGACATGC AATTTGTGAT
ATGGGTATTC CTGGATATAA TAGTAAAACT GATATTATGA AAATAGAAAG AAAAATTAGA
GAAGAACTTG GTTGGAAAGG TGTATCTAGA TCTCTTAAAT CTGAAGAAGC GGATTTAACA
GGTTTATTTT TTAGGATAAG AAAATGA
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| Protein sequence | MKWKIYLLFL IVFVFLVCIL LIYIHMVGGK KNFKVTSKEM EKMKNRNLLK QQDSLTSRTA
IEAEILFAVC VIKKQALTGG KSLARENKYS KKIGAKSAVL NFVFFVMLKN KIEQSAKRNS
LLKNLTDRTF ENRWSRYKEL GKKVPQAYRV YVEDTFLPCD AGDARIFSKE QEYTTYYSYE
DGYYDRETKE FYGFAKVTKR SEGGTVQETE YYNDKYYRKG MVKKSKTIYG GFTYNEKEIE
VDTSPHARII KEEVIQREKD SPYSYLKTSK RYVYDKYGNV TKLYDEGDVT KANDDITAEI
TYWKGGSEET YFKAHPEKIE VKDTNNKLLR KREGSYDSKT GALTQLNEFY EGGKYLKTEI
EWTKEGAIRV ITAPTGKRIE YKYLDGIYPI EIKEVSAKGD QTYTSTIEWD SVLGVKLKET
DSANNTMTYK YDGFGRVTEV RSPYDTDKTP YAKYTYFTPK DSFWYTVTEN KISTRKEDKA
VMRTIVTHDG LGRINYTAKE GEVYIDGTDY QTQTGWNVSG AVYYDEDGRK KGEGQPVFYG
GDIQNELSGS SSQILLYEKL NELKHPTSYE YDGLGRVIKT TLPDGNSQKT EYSIDASLQI
TKTIDPKENI NISKKDIRGN IKEVERRDKN NTLLTKARYE YSVLGEMLKA YDAKDNLLAV
NYDMLGRRIS LESLDMGRKE WNYDDKGRLE YETDSVLRSK LASIKYEYDG LDRIIKIDYP
FSEDVEYEYG AAGEKGAGEV IRKKDETGET MYSYGLLNEV KVETRTIKRG REFQKPVTAV
FNYEADYLGR MQSISYPDGE VLTYNYDKGG QLKGVIGKKG IETYRYVDNI LYDEHGQRVY
IKYGNGVETR YTYDPARRWL KDIKTENKDK NLVFQKINYN FDAVGNVEGY INTSSKYETS
QSYSYDNLYQ LIKAEGTHKQ YGGINPNPDN PHPSNPLYTN KYRQTFAFDI IGNMTNKSST
TNLPGGSIGT TDDTKLNYEL DYEYDSKYAH RLIRAGTRYY RYDANGNITA EKDGKFSDKE
ELTFTYSYFA EHDVYGVDYG FDLEPPEDDP ANLESGGTTS TTPTGGYRRD YTWNERNLLI
KSDDKLNTVI YRYGDDGQRA LKFTQQSNSE TLYFNNFYSV HQVAHEPNHE HGLRVSKHIF
VGNSRLVTAM THADNNGDTT EQTEKRYYYH ADHLQSAQFI TNAKGEQYEH IEYTPYGELW
IEETAPGIDK LPFRFTGKEM DEETGLYYYG ARYLDPKYSR WLSGDPALND YIPKAPIDDE
AKKHNENLPG MGGIYNTINL HVYHYAGNNP VKYTDPDGRE IENLDPSQEA KLLENIINVA
GTGFYFENNK LKFDSSSKAS GKYSQTARDI LIAGIASSKT TYVLPASPEK IQELLPDAYG
ELGFARRVSG EPGNTVGVYM IDVPTTQAAI DYLNNTFNCT PSEADELGFI HEVLGHAICD
MGIPGYNSKT DIMKIERKIR EELGWKGVSR SLKSEEADLT GLFFRIRK
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