Gene TDE2020 details

Gene Information

• Locus tag: TDE2020
• ID: 2740367
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: -
• Start bp: 2040824
• End bp: 2044246
• Gene Length: 3423 bp
• Protein Length: 1140 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 637160910
• Product: YD repeat-containing protein
• Protein accession: NP_972623
• Protein GI: 42527525
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3209] Rhs family protein

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGATTA GTTATTGTCG TATACAACCA AACTATCTCT TTTCTCGGAC AGCGATTGCA 
AGGGAGCAAA AGCAATTTAT AAAAATTGCT TTTGCTGTAC ATCTTTCCGC AGTAATTTCT 
GCGGAAAGAT ACCGAAGCGA TAGCGTAGCC CTGAAAAGCG CGGTGTCGGT ATTTGTGTAC 
TTTTATAGTG TATTGATGGT ACACAAATAC TGGCAGTCCG CCAAAAGAAA GTTATTATTA 
AACAGTCCCA CTGACAGGAC TTTTGAAAAT AGGTGGAGCA GATACAAGGA GCCTAGTAAA 
AATAAAGCGG AGGCGTATCG GGTATACGTC GAGCATTTAT TTTTGCGTAG CGACGCAGGA 
GATGCCCGCA TATTTTCAAA AGAGGTAATC CACGACGGTC TAGGACGCAT AAACTACACA 
GCCAAAGAAG GAGAAGTATA CATAGACGGA ACCGATTACC AAACCCAAAC AGGCTGGAAT 
GTTTCGGGAG CGGTTTATTA TGATGAAGAC GGAAGAAAAA AAGGAGAAGG ACAGCCTGTG 
TTCTATGGAG GAGATATACA AAATGAATTA AGCGGAAGCT CAAGCCAAAT CCTTTTATAT 
GAAAAATTAA ACGAATTAAA ACATCCTACA AGTTATGAAT ATGACGGACT AGGCCGCGTA 
ATAAAAACAA CCCTTCCCGA CGGAAACATA CAGCGTAATG AATACTTGAT AGATTCTTCC 
TTACAAATAA CAAAAACAAC CGACCCTAAA GAAAACATAA ACATCAGTAA AAAAGATATA 
AGAGGAAACA TAAAAGAAGT AGAAAGACGT GATAAAAACA ATACCTTACT AACCAAAGCC 
CGATACGAAT ATTCGGTATT AGGAGAAATG TTAAAAGCCT ACGACGCTAA AGACAACTTA 
TTGGCAGTAA ACTATGACAT GCTCGGAAGG CGCATAAGTT TAGAAAGCCT TGATATGGGA 
AGAAAAGAAT GGAACTATGA CGATAAAGGA AGACTTGAGT ATGAAAACGA CTCCGTATTA 
AGATCAAAAT TAGCGTCAAT AAAATATGAA TACGACGGAC TGGACAGAAT AATAAAAATA 
GACTATCCTT TTAGTGAAGA TGTAGAATAT GAATACGGAG CAGCGGGAGA AAAAGGAGCG 
GGAGAGGTAA TCCGCAAAAA AGATGAAACG GGAGAGACAA TGTACAGCTA CGGCCTACTA 
AACGAGGTAA AGGTAGAAAC ACGGACAATA AAGAGGGGCA GAGAATTTCA AAAACCCGTA 
ACTGCCGTGT TTAACTATGA AGCCGATTAC TTAGGCCGAA TGCAAAGCAT AAGCTACCCT 
GACGGAGAAG TGCTGACTTA CAACTACGAC AAGGGCGGAC AATTAAAAGG AGTTATAGGT 
AAAAAAGGAA TAGAAACCTA TAGGTATGTA GACAATATCT TATACGATGA ACACGGTCAG 
AGAGTCTACA TCAAATACGG AAACGGAGTA GAAACAAGAT ATACTTACGA CCCTGCACGG 
CGTTGGCTAA AAGACATAAA GACAGAAAAC AAAGATAAGA ATTTGGTATT CCAAAAAATA 
AACTATAACT TTGATGCAGT AGGGAATGTA GAAGGCTATA TAAATACTTC AAGCAAATAT 
GAAACAAGTC AAAGCTACAG TTATGACAAT TTGTACCAAC TTATAAAAGC CGAAGGCACG 
CACAAACAAT ACGGAGGAAT AAACCCTAAC CCCGATAACC CGCATCCTTC AAATCCCTTA 
TACACAAATA AATACAGACA AACCTTTGCC TTCGACATAA TAGGGAACAT GACGAATAAG 
AGCAGCACCA CAAACCTTCC CGGAGGCTCA ATAGGAACTA CGGATGACAC AAAACTAAAC 
TATGAACTGG ATTATGAGTA TGACAGTAAA TATGCACACC GCTTAATAAG AGCCGGAACC 
CGATACTATC GCTACGACGC CAACGGCAAC ATCACTGCAG AAAAAGACGG AAAGTTCAGC 
GACAAAGAAG AGCTTACCTT TACCTATTCC TACTTTGCAG AACATGACGT ATACGGAGTA 
GATTACGGCT TTGACCTAGA ACCCCCTGAA GATGACCCTG CAAACCTAGA AAGCGGAGGC 
ACAACAAGTA CTACACCTAC AGGAGGCTAC AGAAGAGATT ATACATGGAA TGAACGCAAC 
CTATTGATAA AATCAGACGA TAAGTTAAAC ACCGTAATAT ACCGCTACGG AGATGACGGA 
CAGAGAGCCT TAAAGTTTAC TCAACAGAGT AATAGCGAAA CTCTTTATTT CAATAACTTT 
TACTCCGTAC ACCAAGTTGC CCATGAACCT AATCACGAAC ATGGATTACG AGTAAGCAAA 
CACATCTTTG TCGGAAACTC AAGATTAGTA ACTGCAATGA CGCACGCAGA CAACCACGGC 
GACACAACCG AGCAGACAGA AAAAAGATAT TATTATCATG CAGATCATCT GCAAAGTGCA 
CAGTTTATAA CAAATGCTAA AGGAGAGCAG TATGAACACA TAGAATACAC GCCTTACGGA 
GAACTCTGGA TTGAAGAGAC TGCACCGGGG ATAGATAAGT TACCGTTTAG GTTTACCGGC 
AAGGAACTGG ATGAAGAGAC TGGACTGTAC TATTATGGTG CGAGGTATTT AGACCCGAAA 
TATTCGAGAT GGTTGAGTGG AGATCCTGCG TTAGGTGAGT ATATTCCGCA AGCTCCGGTA 
AATGACGAAG CTAAAAAACA CAACGAGAAC CTGCCCGGAA TGGGAGGTAT ATACAACACG 
GTAAATTTAC ATGTTTATCA TTATGCGGGG AATAACCCGG TGAAGTATGT GGATCCGAAT 
GGAGAAAAAA TACTGGATGT TAGTACGACT TTGGTTCAAG AAAACGGAGA AGAAGATCCC 
TTAGGTAAGG GTAATACTAC AATTGCTTCA CATGGCTGTG TTTTAACAGC ATATACTAGA 
ATTGCAAATG CGATAAGTGC TATTGGTGAA CGTACATTAC AAAACGCTAA TTCATTGGCT 
CTTAAGAAGG ATATTTATGA TGGAAATAAC AAAAATTTAA TATTTAACTC TCCTACTGCT 
TCCAAATTAG TAAATTCCAT ATCTATTCTA AGTGAATATA AAATGTCATT TTATAAATCA 
TTAAATAATA TTAGCTTAAA TGAATATGGT AGCGAATTGG AAAAACTAAG CAAATCAGAA 
GACTTATATG CTATTACCAT TAGAGTTTCA AATAAGTATG GAGGCCATAC TGTCAACATG 
AATTCTGATG GAATTATTGT GGATACTGAA GATAATTATA CCATCAAAAT TAATAACACC 
TCAGAAAAAG GATATTTACC GTCAACGGTT GTTAATGATA TCATAACGGA TTCTTCAGCT 
ATAATCCGTA TTGATATATT TAAGATAGAA AAGGTAAAAA CTGTTCCATT TTTACCCGAA 
TAA 

 

Protein sequence

MKISYCRIQP NYLFSRTAIA REQKQFIKIA FAVHLSAVIS AERYRSDSVA LKSAVSVFVY 
FYSVLMVHKY WQSAKRKLLL NSPTDRTFEN RWSRYKEPSK NKAEAYRVYV EHLFLRSDAG 
DARIFSKEVI HDGLGRINYT AKEGEVYIDG TDYQTQTGWN VSGAVYYDED GRKKGEGQPV 
FYGGDIQNEL SGSSSQILLY EKLNELKHPT SYEYDGLGRV IKTTLPDGNI QRNEYLIDSS 
LQITKTTDPK ENINISKKDI RGNIKEVERR DKNNTLLTKA RYEYSVLGEM LKAYDAKDNL 
LAVNYDMLGR RISLESLDMG RKEWNYDDKG RLEYENDSVL RSKLASIKYE YDGLDRIIKI 
DYPFSEDVEY EYGAAGEKGA GEVIRKKDET GETMYSYGLL NEVKVETRTI KRGREFQKPV 
TAVFNYEADY LGRMQSISYP DGEVLTYNYD KGGQLKGVIG KKGIETYRYV DNILYDEHGQ 
RVYIKYGNGV ETRYTYDPAR RWLKDIKTEN KDKNLVFQKI NYNFDAVGNV EGYINTSSKY 
ETSQSYSYDN LYQLIKAEGT HKQYGGINPN PDNPHPSNPL YTNKYRQTFA FDIIGNMTNK 
SSTTNLPGGS IGTTDDTKLN YELDYEYDSK YAHRLIRAGT RYYRYDANGN ITAEKDGKFS 
DKEELTFTYS YFAEHDVYGV DYGFDLEPPE DDPANLESGG TTSTTPTGGY RRDYTWNERN 
LLIKSDDKLN TVIYRYGDDG QRALKFTQQS NSETLYFNNF YSVHQVAHEP NHEHGLRVSK 
HIFVGNSRLV TAMTHADNHG DTTEQTEKRY YYHADHLQSA QFITNAKGEQ YEHIEYTPYG 
ELWIEETAPG IDKLPFRFTG KELDEETGLY YYGARYLDPK YSRWLSGDPA LGEYIPQAPV 
NDEAKKHNEN LPGMGGIYNT VNLHVYHYAG NNPVKYVDPN GEKILDVSTT LVQENGEEDP 
LGKGNTTIAS HGCVLTAYTR IANAISAIGE RTLQNANSLA LKKDIYDGNN KNLIFNSPTA 
SKLVNSISIL SEYKMSFYKS LNNISLNEYG SELEKLSKSE DLYAITIRVS NKYGGHTVNM 
NSDGIIVDTE DNYTIKINNT SEKGYLPSTV VNDIITDSSA IIRIDIFKIE KVKTVPFLPE