| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1992 |
|---|
| Symbol | |
|---|
| ID | 2740445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 2009604 |
|---|
| End bp | 2010962 |
|---|
| Gene Length | 1359 bp |
|---|
| Protein Length | 452 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637160882 |
|---|
| Product | OmpA family protein |
|---|
| Protein accession | NP_972595 |
|---|
| Protein GI | 42527497 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAACAACG AAATCTCTTG TGGTATAATT ATTAGTATGA TAAATATTCA GACAGCTAAA
AATTACTATA AACCAAAAAA CCGCACCTTT GTAAAAAAAC TTTTTTTAAT CTGCTTTCTC
TTTAGTTTTT GTTTAAATCT TCTTTTAGGG CAAGAAAATT TATCCCAAGG CAAAATACTC
ATTACGGAAA GAGCCGATTA CTCCGTCTAC ATTGACGGGA AATATGTGGG GCTCACTTCC
AGAGAAACCC GCCTTTATAT GAGCGAAACA AGGCTCGGCA ATGAGGAAGC CTATCTTTAC
GAGGGAGAAG CCTTTGTTCT TCAAAAAACC AGGAAAGACG GGCTTAAAGC CGCTTTACTG
ATAGATTCGA TCTTACCCAT TTCATTTAAA TTTATTCCGG AACAAGATGA AGAAGATATT
GAAAATCCTT ACCAGCCTCA AATTTTCGAT GAAGATTCGG GTTATCCTCT TTTAAGAAAT
TTTCCGATTT TGCCTGAAAC AGAGTTTACT CCCGATGACA TGGGAAAAAC TTGGAAAGGA
AAATGTACCG TAGTAGTAAG ACCCAAGCCT GAAAAAACGG CTGTAAGGAT TCCGGTAAAT
GCAGGTTTTA AATATAAGGG AAAAACTATT TTAAACGGCC AAAGCGTTCA TCATGTAGAA
GCAGCCTTTG GACTCCGCTA CAAACACAGT GACACGCTGG GCGATGAGAA ACTTATGAGC
TCGGAAGGCG GAAGAAAGAC GGACATCTAT CTTGATGATA TAAATAGGCC CGTTTTGATA
CGGGAAAAAA TAGATGAAGA GTTTTTTTAT GCGGACGGAA AAAAAATAAA ACACCGAGGT
TTTTTGCTTC ATTTTTATTC TTATACGGGA AATGCCCTTG TACAAGGAGG CCTTGCACAA
GGCACCCGCT CACAAGAAGC CGCCTCAAAA AAAACGTCCT CACAAGAAAT TCCTTTGCAA
AAAGAAAGGC CGGAAATCAA ACCCAATAAA GATTTTGAGG TAACTAAAAC AAAACGGGGC
ACAATGCTGA GGCTTAAAAA TCTTCAATTT GAACCTGATA GGGCTGTTCT TTTAAAAGGA
GAAGAAGCAA AGCTTGATGA GATAGCAAAG ATTTTAAAAA AATCGGAGAG CGAATTCTTT
TTTGTGGAAG GTCATACAGC CGATGTCGGT AAGCCGGAAG AAGAAAAAAT TCTGTCCCAA
GAAAGGGCTA AGACCGTCAT CGAAAAACTT GTAAAAAGGG GCATACCGGC CGAAAAGTTT
ATCTATCAGG GTGCCGGCGG AACAAAGCCA ATCTCCCCAA ACGGCACCGA GGAAGGACGC
TCTCAAAATA GACGCGTCGA GATTACTATT ATAGGCTAA
|
|---|
| Protein sequence | MNNEISCGII ISMINIQTAK NYYKPKNRTF VKKLFLICFL FSFCLNLLLG QENLSQGKIL
ITERADYSVY IDGKYVGLTS RETRLYMSET RLGNEEAYLY EGEAFVLQKT RKDGLKAALL
IDSILPISFK FIPEQDEEDI ENPYQPQIFD EDSGYPLLRN FPILPETEFT PDDMGKTWKG
KCTVVVRPKP EKTAVRIPVN AGFKYKGKTI LNGQSVHHVE AAFGLRYKHS DTLGDEKLMS
SEGGRKTDIY LDDINRPVLI REKIDEEFFY ADGKKIKHRG FLLHFYSYTG NALVQGGLAQ
GTRSQEAASK KTSSQEIPLQ KERPEIKPNK DFEVTKTKRG TMLRLKNLQF EPDRAVLLKG
EEAKLDEIAK ILKKSESEFF FVEGHTADVG KPEEEKILSQ ERAKTVIEKL VKRGIPAEKF
IYQGAGGTKP ISPNGTEEGR SQNRRVEITI IG
|
|---|
| |