| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1951 |
|---|
| Symbol | |
|---|
| ID | 2740191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | - |
|---|
| Start bp | 1967493 |
|---|
| End bp | 1968419 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637160841 |
|---|
| Product | ribonuclease Z |
|---|
| Protein accession | NP_972554 |
|---|
| Protein GI | 42527456 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1234] Metal-dependent hydrolases of the beta-lactamase superfamily III |
|---|
| TIGRFAM ID | [TIGR02651] ribonuclease Z |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00782694 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTTG AAGCTTTTAT TTTAGGCTGC GGCGGAATGA TGCCGCTTCC ATATAGACAT
TTAACATCGG TTTTGCTTCG CCGTGAGGGC GATTTGTTTT TGTTTGATTG CGGAGAGGGT
ACTCAGGTTG CCCTGCGCCG CCTAAACTTG CGCTGGAAAA GAATCAATGC TATTTTTATA
AGCCATACCC ATGCCGACCA TATAACGGGT CTTCCGGGAC TTCTGATGCT TTCATCCCAA
GTTGACAGGG AGGAACCTCT TTACATAATA GGTCCTCCAA AGGTTGCCGA ATATGTGGAA
ACCAGCCGGA AAGTTTTAGA TATGTATATT AATTATGAAA TTATCGTAAA AGAAATAAGG
GAACCGGGAG TCGTTTATTC TACCGAGGAA TTTCAGGTAC GTTCTTTTTG GCTGGATCAT
ACAAAGCCCT GCATGGGATA CACCTTTGAA GAGTTTGAAA GGCCGGGGGA ATTTAATCCC
GAAGCTGCAA GAGCCTTAAA TGTTCCATGC GGCCCCCTTT GGTCAAAGCT CCAAGGCGGA
AATGAAGTAG TCTCCGCTGA TGGAAAAACT ATCCGCCCCC AAGATGTTAT GGGCCCTAAA
AGAAAGGGCA GAAAATTCAG CTTTGTAACC GACACAAAAT ATTTACCCTC CATTGCTCAA
GAAGTAAAAT ATTCCGACTT TTTTGTATGC GAGGGGATGT TTGAAAAAGG TATGGAAAAA
GATGCTGCCG AAAAAAAACA CATGACCTGT ACGCAGGCGG CTCAAATCGC TAAGGATGCC
GAGGTCAAAA AGATGGCCCT AATTCATTAC AGTCCGAGGT ACACCGATAA CGAGCTTAAA
GTTCTTTTGG ACCATGCCAG AGAAGTTTTC CCCGAAACGA TCCTTTCAAA AGACAGAATG
AATATTCAAT TGGAATATGA AGACTAA
|
|---|
| Protein sequence | MNLEAFILGC GGMMPLPYRH LTSVLLRREG DLFLFDCGEG TQVALRRLNL RWKRINAIFI
SHTHADHITG LPGLLMLSSQ VDREEPLYII GPPKVAEYVE TSRKVLDMYI NYEIIVKEIR
EPGVVYSTEE FQVRSFWLDH TKPCMGYTFE EFERPGEFNP EAARALNVPC GPLWSKLQGG
NEVVSADGKT IRPQDVMGPK RKGRKFSFVT DTKYLPSIAQ EVKYSDFFVC EGMFEKGMEK
DAAEKKHMTC TQAAQIAKDA EVKKMALIHY SPRYTDNELK VLLDHAREVF PETILSKDRM
NIQLEYED
|
|---|
| |