Gene TDE1950 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1950 
Symbol 
ID2740190 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp1966281 
End bp1967354 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content40% 
IMG OID637160840 
Productmembrane lipoprotein TmpC, putative 
Protein accessionNP_972553 
Protein GI42527455 
COG category[R] General function prediction only 
COG ID[COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0939565 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAATA TTGTTAAAAT TTTCATCGGT TGTCTTCTAA TTCTTGGAGT GCTGACTTCT 
TGCAGCAAAG AAGAAGGCAA AAAGGCTTTG ATGGTCGGTA TGGTTACGGA TGCCGGAACC 
ATAGACGATA AATCCTTTAA CCAAGGAACT TGGGAAGGTA TTAAAAAAGC CGAAAGTGAT 
CTTGGTGTAA AGGTTAAATA TTTAAAACCT GTCGGAACAA CCGAAGCCGA CTACATCAAA 
GAAATCTCAA ACCTATATGA TTCAGGATAT AAATTTATTA TTTGTCCCGG ATTTAAATTT 
GAGACGGCCG TATTTAAGGC CCAGTCCAAG TACAAAGATG CAAAATTTAT CATAATCGAC 
GGAAATGCTC ATCCTGCCGA TGCATATGAT GCCCAAAACG GACCTAATAC AATCGGAATC 
AGCTTTTTAG AAAATGAAGC CGGTTTCTTG GCCGGTGTTG CCGCTGCTTT GCAGCAAAAA 
ACCGGAAATT TCGGCTTTAT CGGCGGTATG GAAATCCCTG CAGTACAAAA ATTTAACTGG 
GGATGGCAGC AAGGTATTAA GTATGCAAAC GAAAACCTCG GTACCCAAAT TGAGATTTAT 
CCTGAAAACT TCATATATCA GGGCGGATTT TCCGACATTG CAGCAGGTCA GCAGATTGCT 
GCTTCTATGT ATGACAGGGG CGTTACCGTA ATCCATGCTG CAGCCGGAGG TGTTGGTGTA 
GGCGTTATAA ATGAAGCAAA AACCAGAACT CAGGCAGGAA AAAAAGTTTG GGTAGTAGGT 
GTTGACGTTG ATCAATATGC AGAAGGAGTC ATAGCAGACG GTTCTTCTAT AATTCTTACA 
TCTGCAATGA AGTATCTTGA CAAGGCTTCT TATGACATGA TTAAAGAAGA ATTGAACGGA 
ACATTCGCCG GCGGACGCTC ATTATTGTTC TCTGTAAAAG AAAACGGCGT AGGAATTCCT 
GCTAAGAATC CTAACCTTTC CGATGATGTA CAGCAAAAGG TAAACGAAAT TTATCAAAAA 
ATAAAGAACG GTGAGATTGT AGTAAGTGCA ACTCAAGGCG ATTTATTTAA ATAA
 
Protein sequence
MKNIVKIFIG CLLILGVLTS CSKEEGKKAL MVGMVTDAGT IDDKSFNQGT WEGIKKAESD 
LGVKVKYLKP VGTTEADYIK EISNLYDSGY KFIICPGFKF ETAVFKAQSK YKDAKFIIID 
GNAHPADAYD AQNGPNTIGI SFLENEAGFL AGVAAALQQK TGNFGFIGGM EIPAVQKFNW 
GWQQGIKYAN ENLGTQIEIY PENFIYQGGF SDIAAGQQIA ASMYDRGVTV IHAAAGGVGV 
GVINEAKTRT QAGKKVWVVG VDVDQYAEGV IADGSSIILT SAMKYLDKAS YDMIKEELNG 
TFAGGRSLLF SVKENGVGIP AKNPNLSDDV QQKVNEIYQK IKNGEIVVSA TQGDLFK