Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TDE1948 |
Symbol | |
ID | 2740188 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Treponema denticola ATCC 35405 |
Kingdom | Bacteria |
Replicon accession | NC_002967 |
Strand | - |
Start bp | 1963544 |
End bp | 1964641 |
Gene Length | 1098 bp |
Protein Length | 365 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 637160838 |
Product | ABC transporter, permease protein |
Protein accession | NP_972551 |
Protein GI | 42527453 |
COG category | [R] General function prediction only |
COG ID | [COG4603] ABC-type uncharacterized transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.476576 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAAGC TTAAAATACG ATTTAAAGAC TTTAACATAG CCGAAAACAA TTTTATTATC AGTTTTTCCG CTGTTTTACT CGGCCTTATT GCCGGTGCTG TTTTTATAGC TGTTTCGGGA ACAAATCCGT TTTCGGCCTT TTCTTACCTT TTCCGGGGCG GCCTAATGAA TATAGAGCGT ATAGGAAACA CCCTTGCAAC GGCTACGATT CTTTTGTTTG TAGGACTTTC GGTCAGCTTT GCTTTTAAAA CGGGGCTTTT TAATATCGGT GCCTCAGGAC AGATGCTCAT TGGAGGCCTT TTTGCAACCT TTATAGCCTT AAACAGCTCA ATGCCGCGTC CGGTTTTATT GCTTGTTTTG ATAATAGCCG CAATGATAGG AGGAGCCTTT TGGGCCGCTT TGCCCGGTCT TTTAAAAGCC GTATTCAATG TACATGAGGT CGTTTCTACC ATAATGATGA ACTGGATAGC CTATTGGATA GTTTATTATT CGGTTCAAGG CTATCTAAAG GCCGAATTTA TCGAGACCGA AAGCCGCTCC ATCGCTGTAG AACACACCCT GAGGGCAGGG TGGCTGAGTA ATCTCTTCGG AAGCGAGTAT ATAAATTACG GCATATTTTT AGGTATTTTA GGAATTATCC TTGTAAAAAT AATATTGGAT AAAACGACTC TGGGTTTTGA GCTAAAGGCT GCAGGATATA ATAAGAGCGG AGCGGAATAT GCAGGCATCA AGGTAAACAG AAATATTATC TTTTCTATGA TGATTGCCGG AGCTCTTTCA GGTCTTGCCG GTTTAACCTA TTATGCCGGT TATTCCCTTA ATATGCAGAT CGGTGTTTTA CCCTCTCAAG GTTTTGACGG AATAGCCGTT GCTCTTTTAG GCGCTGGAAA TTCGATAGGT GTTGCTTTAA GCTCCATCTT TTTCGGTATT CTCCATGTGG GAAAGGGCTT TATGAGCGCC AACACAAATG TTCCGCCCGA AATAGCCGAT ACCATCATTG CAGTTATCAT TTATTTTACG GCTACAAGTT TATTGTTAAA GAAATTTTGG TCTAAAATCC AAAAAAATAA GGAAAAAACC GTCAAGGAGG CGAACTAA
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Protein sequence | MSKLKIRFKD FNIAENNFII SFSAVLLGLI AGAVFIAVSG TNPFSAFSYL FRGGLMNIER IGNTLATATI LLFVGLSVSF AFKTGLFNIG ASGQMLIGGL FATFIALNSS MPRPVLLLVL IIAAMIGGAF WAALPGLLKA VFNVHEVVST IMMNWIAYWI VYYSVQGYLK AEFIETESRS IAVEHTLRAG WLSNLFGSEY INYGIFLGIL GIILVKIILD KTTLGFELKA AGYNKSGAEY AGIKVNRNII FSMMIAGALS GLAGLTYYAG YSLNMQIGVL PSQGFDGIAV ALLGAGNSIG VALSSIFFGI LHVGKGFMSA NTNVPPEIAD TIIAVIIYFT ATSLLLKKFW SKIQKNKEKT VKEAN
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