Gene TDE1948 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1948 
Symbol 
ID2740188 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand
Start bp1963544 
End bp1964641 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content41% 
IMG OID637160838 
ProductABC transporter, permease protein 
Protein accessionNP_972551 
Protein GI42527453 
COG category[R] General function prediction only 
COG ID[COG4603] ABC-type uncharacterized transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.476576 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAAGC TTAAAATACG ATTTAAAGAC TTTAACATAG CCGAAAACAA TTTTATTATC 
AGTTTTTCCG CTGTTTTACT CGGCCTTATT GCCGGTGCTG TTTTTATAGC TGTTTCGGGA
ACAAATCCGT TTTCGGCCTT TTCTTACCTT TTCCGGGGCG GCCTAATGAA TATAGAGCGT
ATAGGAAACA CCCTTGCAAC GGCTACGATT CTTTTGTTTG TAGGACTTTC GGTCAGCTTT
GCTTTTAAAA CGGGGCTTTT TAATATCGGT GCCTCAGGAC AGATGCTCAT TGGAGGCCTT
TTTGCAACCT TTATAGCCTT AAACAGCTCA ATGCCGCGTC CGGTTTTATT GCTTGTTTTG
ATAATAGCCG CAATGATAGG AGGAGCCTTT TGGGCCGCTT TGCCCGGTCT TTTAAAAGCC
GTATTCAATG TACATGAGGT CGTTTCTACC ATAATGATGA ACTGGATAGC CTATTGGATA
GTTTATTATT CGGTTCAAGG CTATCTAAAG GCCGAATTTA TCGAGACCGA AAGCCGCTCC
ATCGCTGTAG AACACACCCT GAGGGCAGGG TGGCTGAGTA ATCTCTTCGG AAGCGAGTAT
ATAAATTACG GCATATTTTT AGGTATTTTA GGAATTATCC TTGTAAAAAT AATATTGGAT
AAAACGACTC TGGGTTTTGA GCTAAAGGCT GCAGGATATA ATAAGAGCGG AGCGGAATAT
GCAGGCATCA AGGTAAACAG AAATATTATC TTTTCTATGA TGATTGCCGG AGCTCTTTCA
GGTCTTGCCG GTTTAACCTA TTATGCCGGT TATTCCCTTA ATATGCAGAT CGGTGTTTTA
CCCTCTCAAG GTTTTGACGG AATAGCCGTT GCTCTTTTAG GCGCTGGAAA TTCGATAGGT
GTTGCTTTAA GCTCCATCTT TTTCGGTATT CTCCATGTGG GAAAGGGCTT TATGAGCGCC
AACACAAATG TTCCGCCCGA AATAGCCGAT ACCATCATTG CAGTTATCAT TTATTTTACG
GCTACAAGTT TATTGTTAAA GAAATTTTGG TCTAAAATCC AAAAAAATAA GGAAAAAACC
GTCAAGGAGG CGAACTAA
 
Protein sequence
MSKLKIRFKD FNIAENNFII SFSAVLLGLI AGAVFIAVSG TNPFSAFSYL FRGGLMNIER 
IGNTLATATI LLFVGLSVSF AFKTGLFNIG ASGQMLIGGL FATFIALNSS MPRPVLLLVL
IIAAMIGGAF WAALPGLLKA VFNVHEVVST IMMNWIAYWI VYYSVQGYLK AEFIETESRS
IAVEHTLRAG WLSNLFGSEY INYGIFLGIL GIILVKIILD KTTLGFELKA AGYNKSGAEY
AGIKVNRNII FSMMIAGALS GLAGLTYYAG YSLNMQIGVL PSQGFDGIAV ALLGAGNSIG
VALSSIFFGI LHVGKGFMSA NTNVPPEIAD TIIAVIIYFT ATSLLLKKFW SKIQKNKEKT
VKEAN