Gene TDE1859 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1859 
Symbol 
ID2740048 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand+ 
Start bp1885097 
End bp1886290 
Gene Length1194 bp 
Protein Length397 aa 
Translation table11 
GC content34% 
IMG OID637160746 
Producthypothetical protein 
Protein accessionNP_972463 
Protein GI42527365 
COG category[S] Function unknown 
COG ID[COG4709] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.0000288231 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAAAGG ACCAATTTTT AACTGAACTT AATTCTTATC TTTCGGTTTT AAAACCTGAA 
GACAGAAAAA ATACGATCGA GTTTTATGAA GAATACTTTG AAGATGCCGA AAGCGAAGAG 
GCGGCAATTG AAGAACTTGG AGCACCTAAA AAACTTGCAG AGGAGATTAT AGATTTTCAT 
AAAACCTCAT ATAAGGGTGA AAATACTCAA GTCTCCCGGC AGTTTTCGCC CGATGAAAGC 
ATTTCGGAAA TTATTTTAAA CATAACAGCC GCAAAAGTTT TAATAAATGC TTCTCAAGAA 
GAAAAAATTG AGTATACTAC TCAAAATATT GCGGATGATG ATTTTTCGGC AAAGATTGAA 
AACGGAAAGC TTATAATAAA GGAAAAGCCC GTTTTCTTTT TTAGCAAAAA AGGCTTTGCT 
TCCTTTTTGG AAAATTTTAA CATAAATACC TCTTTTAATG CAGGCAAAAG AGAAATCATC 
ATAAATATTC CCAAAGATAC TCGTCTTGAA AAGCTCGAAT TTAATTCCCA GATGGGTTCT 
TTAAAAATAG AAGAAGTAAA TGTAGAAGTT ACTGAAGGCT ATACAACATG CGGGAATTTT 
TCGGTAAAAA GCGGTCTACA CAAAAAAATA GATTTTAATA CTTCTGCAGG TTCCATAAAT 
ATAAGCGATA TTGATATTGA AACTATGAAG CTTTCTTCTT CGGCAGGTGC TATAAAATTT 
GAAAACATAA AAGCCGGTAA TATTTCCGCA TCGACAGGGG CAGGAACAAT TGACTTTATA 
AGAACCGAAA GCTCCTACAT CAATGCAAAT TCGGGAGCCG GAAATATAAC GGGAAACGAA 
TTAAAATCGG ATAGAGGAAA ATTCAATACG GGGGCGGGAA CTAATAAATT CCAAAAATGC 
GATTTTAATG AAGTTATATT AAACACAGGA GCAGGAAGCA TAATATTCCA AGGAAATCTG 
CATGACTATG CTAAAATTAA TTCTGCCATA GGTTCAGTGG ATCTTAATTT GCCTGATAAC 
GTAGAAAATT ACGATATAAA TATTTTTTCT AAACAAGGCA GAGTAAAACT AAATGGGGAA 
AATGTTGAAG GAAAAGGAGA CAGGCTTAAC CTCGGAAGTA AAACTTCAGA TACCAATATA 
AAGATCAGCA CTGCCTTCGG AAAAATTAAA ATAAGCACTC GGGAAGGAGA ATAA
 
Protein sequence
MTKDQFLTEL NSYLSVLKPE DRKNTIEFYE EYFEDAESEE AAIEELGAPK KLAEEIIDFH 
KTSYKGENTQ VSRQFSPDES ISEIILNITA AKVLINASQE EKIEYTTQNI ADDDFSAKIE 
NGKLIIKEKP VFFFSKKGFA SFLENFNINT SFNAGKREII INIPKDTRLE KLEFNSQMGS 
LKIEEVNVEV TEGYTTCGNF SVKSGLHKKI DFNTSAGSIN ISDIDIETMK LSSSAGAIKF 
ENIKAGNISA STGAGTIDFI RTESSYINAN SGAGNITGNE LKSDRGKFNT GAGTNKFQKC 
DFNEVILNTG AGSIIFQGNL HDYAKINSAI GSVDLNLPDN VENYDINIFS KQGRVKLNGE 
NVEGKGDRLN LGSKTSDTNI KISTAFGKIK ISTREGE