| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1685 |
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| Symbol | |
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| ID | 2740140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | - |
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| Start bp | 1737442 |
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| End bp | 1740405 |
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| Gene Length | 2964 bp |
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| Protein Length | 987 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 637160568 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | NP_972289 |
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| Protein GI | 42527191 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00461565 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTATAAGA AACTAATTCT TTTATTTTTT ATTTTGATTA CTTTTAATTT ATTTTCTGAT
GAGGATGTTC TTGTTTTTTA CTCTCAGCCT TCATCCATTG CATCCAAATT TGTTACCGGT
ATTTTGCAGG ATTCATACGG CCGGATTTGG TTCGGTACTA AAGAAGGTTT GGCATATTAT
GACGGTATTA AATATAAAAA TTACGAATAT ATTCCTTTTT CAAAAGATTC CATTCAGTCT
TCGCAAATTC AATGTCTTTA TAATGACCCT AGAAAAGCAG AAAACGGAAG CGATGTGTTT
TGGATAGGCA CTTTTTACGG AGTTGAAAGG TTTAATGTCG ACACGGAAAC TTTTACCCAT
TTTGATATGA CGAGTTCGGT TGTTCTCTGC TTTTTAAGGG ATTCTCACGG CCGCTTATGG
ATCGGAACCT TGGACGGCTT GTATATACTA AATGAAGATG ACGGTTCCGT TGTTAAATTT
TCTCAAGCTT CCGAATTTTA TATAGGAAAC AACGGAATAT CCCATATTTA TGAAGACTCT
GAAGGGCGGA TATACGCATG TACACATGAG GGCTTATGGG AATATGATGA GCCCAATAAA
AGATTTCGAC GATCAAGGCT TTTTGAAAAA AATAGTGCGG TTACTGACTC AATTATTAAT
AATATTTTTG AAGAAGACGG AATATATTGG GTATCCGTTT GGGATACCGG ACTATTTCGA
ATTGATCCTA AAAACGGAAA ACGAGACCTG TTTTCATTTT CAAACAACAA AATAACATGC
CTATCAAACG AATTTTCTGA TAATGTACTA TTGATAGGAA CTTGGGGCGG CGGCTTAATA
AGTTTTGATA AAAATACATA TTCTTATACC GAGTATACTT CAAAACAGCG TTCATATAAT
CTTTCAAACG ATTTTATTTT TTCGATATAT GTAGATACTT ACGGCTCATT ATGGGTCGGC
ACAAACGGAG GCGGAGTAAA CATATATGAT ACTAAACGTA TGTGGTCAAA ACTAATATTG
CCCCATGAAA ATAAAATCGA CGGCAGAGAA AATTCGGTTT CCGGTTTGAC TAAGGATAAA
AACGGAAACT TATGGATAAG TCTTTTAAAT AACGGTATAA CTTATTATGA TTTAAGCACA
GGAAAAAAGA AATACTATCG TTATTCCGAA TCTAAAATTA TTTCCAACTC CGTATTTAAA
TTTTACATAG ATAAAAATGA GGATATATGG GTTGGTACGG ATCTTGGGTT ATGTAAGTAC
GATAAAAAAA AGGATGCTTT TGTTGGAGTT AATCTATACA ATGATAATAT AATTGAAGAC
GGTGAAAGAC TTATATACAA TATCATAAGC GATGATAACG AGTTTTTATG GATAGGTACT
TATGATGGAG GCCTTATTAA ATTTTCACCT TCATCCGGAA TTCTTAAGCG ATATAAAAAT
GATCCTAAAA ATCCCAATAG TATATGCAGC AATCTTGTTT TTAGCCTGCT GATCGATTCT
TATAAAAGAC TTTGGGTAGG AACCAACAAG GGCCTTGCCG AGTATAAGCC TTCAACCGAT
GAATTCGCAA TATACCGATA CGATGTAAAT AACAGAAAAG GTATTTCTTC AGACCGAATA
ACCTCATTAT TTCAAGATGT TTCCGGTAAA TTGTGGATTG GAACAAGTGA CGGAGGAATT
AACATATTCG ATACCGAAAA AAAAGAGGCG TTAAATTATA CTGCAAATGA GGGGCTCCCC
GCAAACTTTA TTATCGGTAT GACCCATATG GATAATCACT CCATATGTGT TACTGCAATA
AAAGGTATGA CAATATTTAA TAAAGATACT GAAATTATAT ACAGTTATAC TTTATATAAC
CATGAAAGAC GATTTACAAC AGTTCCTATT ATGATTGGAG ATCAATGTTT TGTGGGAACA
CAAGAAGGCG TTTTAGGCAT GGATATTAAC TATCTTTTAT CGTTTAAAAG ACAAGAGGTT
CCCGTAAAAA TACGAACTAT AGGTATAAAC GGAAATCAGA CTCCGGTATT TAAAATAGAT
CTTCAAAAAA CTTATAAATA TAAGTATTCC GAAAATAATA TAAGCTTTGA GTTTTCATCG
ATGGATTTAT CTCCTCTTTC AAGACCTTCT TACATTTTTA TGCTCGAAGG TTTTGATAAA
AATTGGATTA ATGCCAATAT GAAAAATTAT GTACAATATA CTAATCTTAA ACCGGGAAAA
TATACATTTA AAGTAAAGGA TATTTCAAAT CCATATCCTG AACCAACATC TTTTACTTTT
ATTATAGAAA AACCTTTTTG GCTTTCGACG CCGATGATAG CCGTCTATAT TTTAATTTTT
GCAGGCTTAA CTTTTTTAGC TTGCAGGATT AATAGGCTCT TTCAATATAA GATTGCCAAT
AAAAAACTTC AACAAGAACA AAAAGACCTT ATATCTGCAA ATGAACAGCT TACGGTTTTA
TCTACGGTTG ACGAATTAAC AGGTGTAGGG AACAGAAGAC AGTTGGACAC AGTGGGTAAG
GATCTTTGGC GTAGGGGATT GGATAATAAA CAACCGATAT CATTGATAAT GATAGATATA
GATTTATTTA AACAATACAA TGACCTGTAT GGACATCAGG CCGGAGATAA TGTTCTTAGA
ACTGTTGCTC AAACCTTACA AAAAAAACTT AGAGCAAAAT ATGATTTTGT AGGAAGATAC
GGAGGAGAAG AATTCTTGGT TCTGCTTTAT AATAGCTCTG CCTCCGAAAC AATGAAGATA
GCCGAAAAAC TCCGTATTGA AATTAAAAAT TTAAATATTG AACATTCGGC TGAAAAGGAT
AAGATCTTAA CTATCAGTTT AGGTGCTTAT ACTTCCGTTC CTAATAATGA GCTTTCATAT
GAAACTATGC TTTCTTTTGC AGATTCTGCT CTTTATAAAG CTAAGGAAAG CGGAAGAGAT
ATCTGCAAAA TGTATACGGA GTAA
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| Protein sequence | MYKKLILLFF ILITFNLFSD EDVLVFYSQP SSIASKFVTG ILQDSYGRIW FGTKEGLAYY
DGIKYKNYEY IPFSKDSIQS SQIQCLYNDP RKAENGSDVF WIGTFYGVER FNVDTETFTH
FDMTSSVVLC FLRDSHGRLW IGTLDGLYIL NEDDGSVVKF SQASEFYIGN NGISHIYEDS
EGRIYACTHE GLWEYDEPNK RFRRSRLFEK NSAVTDSIIN NIFEEDGIYW VSVWDTGLFR
IDPKNGKRDL FSFSNNKITC LSNEFSDNVL LIGTWGGGLI SFDKNTYSYT EYTSKQRSYN
LSNDFIFSIY VDTYGSLWVG TNGGGVNIYD TKRMWSKLIL PHENKIDGRE NSVSGLTKDK
NGNLWISLLN NGITYYDLST GKKKYYRYSE SKIISNSVFK FYIDKNEDIW VGTDLGLCKY
DKKKDAFVGV NLYNDNIIED GERLIYNIIS DDNEFLWIGT YDGGLIKFSP SSGILKRYKN
DPKNPNSICS NLVFSLLIDS YKRLWVGTNK GLAEYKPSTD EFAIYRYDVN NRKGISSDRI
TSLFQDVSGK LWIGTSDGGI NIFDTEKKEA LNYTANEGLP ANFIIGMTHM DNHSICVTAI
KGMTIFNKDT EIIYSYTLYN HERRFTTVPI MIGDQCFVGT QEGVLGMDIN YLLSFKRQEV
PVKIRTIGIN GNQTPVFKID LQKTYKYKYS ENNISFEFSS MDLSPLSRPS YIFMLEGFDK
NWINANMKNY VQYTNLKPGK YTFKVKDISN PYPEPTSFTF IIEKPFWLST PMIAVYILIF
AGLTFLACRI NRLFQYKIAN KKLQQEQKDL ISANEQLTVL STVDELTGVG NRRQLDTVGK
DLWRRGLDNK QPISLIMIDI DLFKQYNDLY GHQAGDNVLR TVAQTLQKKL RAKYDFVGRY
GGEEFLVLLY NSSASETMKI AEKLRIEIKN LNIEHSAEKD KILTISLGAY TSVPNNELSY
ETMLSFADSA LYKAKESGRD ICKMYTE
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