Gene TDE1685 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1685 
Symbol 
ID2740140 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand
Start bp1737442 
End bp1740405 
Gene Length2964 bp 
Protein Length987 aa 
Translation table11 
GC content33% 
IMG OID637160568 
ProductGGDEF domain-containing protein 
Protein accessionNP_972289 
Protein GI42527191 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00461565 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTATAAGA AACTAATTCT TTTATTTTTT ATTTTGATTA CTTTTAATTT ATTTTCTGAT 
GAGGATGTTC TTGTTTTTTA CTCTCAGCCT TCATCCATTG CATCCAAATT TGTTACCGGT
ATTTTGCAGG ATTCATACGG CCGGATTTGG TTCGGTACTA AAGAAGGTTT GGCATATTAT
GACGGTATTA AATATAAAAA TTACGAATAT ATTCCTTTTT CAAAAGATTC CATTCAGTCT
TCGCAAATTC AATGTCTTTA TAATGACCCT AGAAAAGCAG AAAACGGAAG CGATGTGTTT
TGGATAGGCA CTTTTTACGG AGTTGAAAGG TTTAATGTCG ACACGGAAAC TTTTACCCAT
TTTGATATGA CGAGTTCGGT TGTTCTCTGC TTTTTAAGGG ATTCTCACGG CCGCTTATGG
ATCGGAACCT TGGACGGCTT GTATATACTA AATGAAGATG ACGGTTCCGT TGTTAAATTT
TCTCAAGCTT CCGAATTTTA TATAGGAAAC AACGGAATAT CCCATATTTA TGAAGACTCT
GAAGGGCGGA TATACGCATG TACACATGAG GGCTTATGGG AATATGATGA GCCCAATAAA
AGATTTCGAC GATCAAGGCT TTTTGAAAAA AATAGTGCGG TTACTGACTC AATTATTAAT
AATATTTTTG AAGAAGACGG AATATATTGG GTATCCGTTT GGGATACCGG ACTATTTCGA
ATTGATCCTA AAAACGGAAA ACGAGACCTG TTTTCATTTT CAAACAACAA AATAACATGC
CTATCAAACG AATTTTCTGA TAATGTACTA TTGATAGGAA CTTGGGGCGG CGGCTTAATA
AGTTTTGATA AAAATACATA TTCTTATACC GAGTATACTT CAAAACAGCG TTCATATAAT
CTTTCAAACG ATTTTATTTT TTCGATATAT GTAGATACTT ACGGCTCATT ATGGGTCGGC
ACAAACGGAG GCGGAGTAAA CATATATGAT ACTAAACGTA TGTGGTCAAA ACTAATATTG
CCCCATGAAA ATAAAATCGA CGGCAGAGAA AATTCGGTTT CCGGTTTGAC TAAGGATAAA
AACGGAAACT TATGGATAAG TCTTTTAAAT AACGGTATAA CTTATTATGA TTTAAGCACA
GGAAAAAAGA AATACTATCG TTATTCCGAA TCTAAAATTA TTTCCAACTC CGTATTTAAA
TTTTACATAG ATAAAAATGA GGATATATGG GTTGGTACGG ATCTTGGGTT ATGTAAGTAC
GATAAAAAAA AGGATGCTTT TGTTGGAGTT AATCTATACA ATGATAATAT AATTGAAGAC
GGTGAAAGAC TTATATACAA TATCATAAGC GATGATAACG AGTTTTTATG GATAGGTACT
TATGATGGAG GCCTTATTAA ATTTTCACCT TCATCCGGAA TTCTTAAGCG ATATAAAAAT
GATCCTAAAA ATCCCAATAG TATATGCAGC AATCTTGTTT TTAGCCTGCT GATCGATTCT
TATAAAAGAC TTTGGGTAGG AACCAACAAG GGCCTTGCCG AGTATAAGCC TTCAACCGAT
GAATTCGCAA TATACCGATA CGATGTAAAT AACAGAAAAG GTATTTCTTC AGACCGAATA
ACCTCATTAT TTCAAGATGT TTCCGGTAAA TTGTGGATTG GAACAAGTGA CGGAGGAATT
AACATATTCG ATACCGAAAA AAAAGAGGCG TTAAATTATA CTGCAAATGA GGGGCTCCCC
GCAAACTTTA TTATCGGTAT GACCCATATG GATAATCACT CCATATGTGT TACTGCAATA
AAAGGTATGA CAATATTTAA TAAAGATACT GAAATTATAT ACAGTTATAC TTTATATAAC
CATGAAAGAC GATTTACAAC AGTTCCTATT ATGATTGGAG ATCAATGTTT TGTGGGAACA
CAAGAAGGCG TTTTAGGCAT GGATATTAAC TATCTTTTAT CGTTTAAAAG ACAAGAGGTT
CCCGTAAAAA TACGAACTAT AGGTATAAAC GGAAATCAGA CTCCGGTATT TAAAATAGAT
CTTCAAAAAA CTTATAAATA TAAGTATTCC GAAAATAATA TAAGCTTTGA GTTTTCATCG
ATGGATTTAT CTCCTCTTTC AAGACCTTCT TACATTTTTA TGCTCGAAGG TTTTGATAAA
AATTGGATTA ATGCCAATAT GAAAAATTAT GTACAATATA CTAATCTTAA ACCGGGAAAA
TATACATTTA AAGTAAAGGA TATTTCAAAT CCATATCCTG AACCAACATC TTTTACTTTT
ATTATAGAAA AACCTTTTTG GCTTTCGACG CCGATGATAG CCGTCTATAT TTTAATTTTT
GCAGGCTTAA CTTTTTTAGC TTGCAGGATT AATAGGCTCT TTCAATATAA GATTGCCAAT
AAAAAACTTC AACAAGAACA AAAAGACCTT ATATCTGCAA ATGAACAGCT TACGGTTTTA
TCTACGGTTG ACGAATTAAC AGGTGTAGGG AACAGAAGAC AGTTGGACAC AGTGGGTAAG
GATCTTTGGC GTAGGGGATT GGATAATAAA CAACCGATAT CATTGATAAT GATAGATATA
GATTTATTTA AACAATACAA TGACCTGTAT GGACATCAGG CCGGAGATAA TGTTCTTAGA
ACTGTTGCTC AAACCTTACA AAAAAAACTT AGAGCAAAAT ATGATTTTGT AGGAAGATAC
GGAGGAGAAG AATTCTTGGT TCTGCTTTAT AATAGCTCTG CCTCCGAAAC AATGAAGATA
GCCGAAAAAC TCCGTATTGA AATTAAAAAT TTAAATATTG AACATTCGGC TGAAAAGGAT
AAGATCTTAA CTATCAGTTT AGGTGCTTAT ACTTCCGTTC CTAATAATGA GCTTTCATAT
GAAACTATGC TTTCTTTTGC AGATTCTGCT CTTTATAAAG CTAAGGAAAG CGGAAGAGAT
ATCTGCAAAA TGTATACGGA GTAA
 
Protein sequence
MYKKLILLFF ILITFNLFSD EDVLVFYSQP SSIASKFVTG ILQDSYGRIW FGTKEGLAYY 
DGIKYKNYEY IPFSKDSIQS SQIQCLYNDP RKAENGSDVF WIGTFYGVER FNVDTETFTH
FDMTSSVVLC FLRDSHGRLW IGTLDGLYIL NEDDGSVVKF SQASEFYIGN NGISHIYEDS
EGRIYACTHE GLWEYDEPNK RFRRSRLFEK NSAVTDSIIN NIFEEDGIYW VSVWDTGLFR
IDPKNGKRDL FSFSNNKITC LSNEFSDNVL LIGTWGGGLI SFDKNTYSYT EYTSKQRSYN
LSNDFIFSIY VDTYGSLWVG TNGGGVNIYD TKRMWSKLIL PHENKIDGRE NSVSGLTKDK
NGNLWISLLN NGITYYDLST GKKKYYRYSE SKIISNSVFK FYIDKNEDIW VGTDLGLCKY
DKKKDAFVGV NLYNDNIIED GERLIYNIIS DDNEFLWIGT YDGGLIKFSP SSGILKRYKN
DPKNPNSICS NLVFSLLIDS YKRLWVGTNK GLAEYKPSTD EFAIYRYDVN NRKGISSDRI
TSLFQDVSGK LWIGTSDGGI NIFDTEKKEA LNYTANEGLP ANFIIGMTHM DNHSICVTAI
KGMTIFNKDT EIIYSYTLYN HERRFTTVPI MIGDQCFVGT QEGVLGMDIN YLLSFKRQEV
PVKIRTIGIN GNQTPVFKID LQKTYKYKYS ENNISFEFSS MDLSPLSRPS YIFMLEGFDK
NWINANMKNY VQYTNLKPGK YTFKVKDISN PYPEPTSFTF IIEKPFWLST PMIAVYILIF
AGLTFLACRI NRLFQYKIAN KKLQQEQKDL ISANEQLTVL STVDELTGVG NRRQLDTVGK
DLWRRGLDNK QPISLIMIDI DLFKQYNDLY GHQAGDNVLR TVAQTLQKKL RAKYDFVGRY
GGEEFLVLLY NSSASETMKI AEKLRIEIKN LNIEHSAEKD KILTISLGAY TSVPNNELSY
ETMLSFADSA LYKAKESGRD ICKMYTE