Gene TDE1673 details

Gene Information

• Locus tag: TDE1673
• Symbol: clpX
• ID: 2740128
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 1727018
• End bp: 1728265
• Gene Length: 1248 bp
• Protein Length: 415 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 637160557
• Product: ATP-dependent protease ATP-binding subunit ClpX
• Protein accession: NP_972278
• Protein GI: 42527180
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1219] ATP-dependent protease Clp, ATPase subunit
• TIGRFAM ID: [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX)

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.0574606
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAGAA ATAGAATGGG CGGAGCTTTA ATATGCTCTT TTTGTAATAA ACCGGAAAGC 
TCTGAACGCT TTGTAGTTCC GGGTCCCGGA GGTATTGCCA TCTGTGATAG ATGTGTAGAT 
CTTTGCGAAA GCTATATAAA ATCGTATAAG ACTGTCAGGC CTGTTGACCG TTCAGGAGCC 
ATTCCTACAC CTCAAGAGCT CAAAGAATAT CTTGACGAAT ATGTAATAGG TCAAGAACAG 
GCAAAGAGAG TTCTATCTGT AGCCGTTTAT AACCATTATA AGCGGATAAT GAATCCTCCT 
TTAGAGAATG ACGTAGTCAT AGAAAAGTCA AATGTCCTTT TGCTGGGCCC TACGGGATCG 
GGTAAAACTC TTTTAGCAAA AACCCTTGCA CAAAAAATGC AGGTTCCCTT TGCCATCGCC 
GATGCAACAA CCTTGACCGA AGCAGGCTAC GTAGGCGAAG ACGTGGAAAA TATCCTTCTT 
AAGCTTATCC AAAATGCAAA CGGAGATATA AAAGAAGCCG AAATGGGTAT CATCTTTATC 
GATGAAATAG ATAAGATTTC CAGAAAGAGC GAAAATGTTT CCATTACCCG AGATGTATCG 
GGCGAAGGTG TTCAACAAGC TCTTCTAAAA ATAATAGAAG GAACCTCAGC TTCTGTACCT 
CCTCAGGGCG GAAGAAAGCA TCCGAATCAG GACATGCTTA AAATAGATAC AACAAATATC 
CTATTTATCT GCGGAGGGGC ATTTGTGGGT TTGGATAAGA TAGTGGAAGC CCGCATCTCT 
ACAAAGCCTA TAGGCTTCGG TGCTGAGGTA AAAAAGCTGA GCGAAAAAAA TCTTACCGAG 
TTGTATGATC AGGTTTCACC CGATGATTTG GTAAAATTCG GGCTTATCCC GGAACTGATA 
GGAAGAATCC CGATAAAGGT AGCCTTAAAT GAGCTTACAA AGGAAGATTT AACACGAATA 
TTGGTTGAAC CCAAAAATGC CATAATAAAA CAGTTTCAGG CAACCTTTAA ACTTGATAAT 
GTCGATCTTC ACTTTGACAA AGATGCTATT ACAGCCATTG CTCAGCAGGC TATAGACCAA 
AATACGGGAG CGAGAGGTTT ACGTTCCATT GTCGAAAAGC TCATGCTGGA TGCAATGTTT 
GAAGCCCCCT CCATAAAGGG TAGAAAAGAG CTGATAATAA ATAAAAAAAT GATAGGAAAC 
TCTTCGTCAA AACCGAAGAT AAAACTTCTC GACGAAAAAA CCGCTTAA 

 

Protein sequence

MARNRMGGAL ICSFCNKPES SERFVVPGPG GIAICDRCVD LCESYIKSYK TVRPVDRSGA 
IPTPQELKEY LDEYVIGQEQ AKRVLSVAVY NHYKRIMNPP LENDVVIEKS NVLLLGPTGS 
GKTLLAKTLA QKMQVPFAIA DATTLTEAGY VGEDVENILL KLIQNANGDI KEAEMGIIFI 
DEIDKISRKS ENVSITRDVS GEGVQQALLK IIEGTSASVP PQGGRKHPNQ DMLKIDTTNI 
LFICGGAFVG LDKIVEARIS TKPIGFGAEV KKLSEKNLTE LYDQVSPDDL VKFGLIPELI 
GRIPIKVALN ELTKEDLTRI LVEPKNAIIK QFQATFKLDN VDLHFDKDAI TAIAQQAIDQ 
NTGARGLRSI VEKLMLDAMF EAPSIKGRKE LIINKKMIGN SSSKPKIKLL DEKTA