| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1640 |
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| Symbol | |
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| ID | 2739749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | + |
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| Start bp | 1690536 |
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| End bp | 1692017 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637160523 |
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| Product | 3-dehydroquinate dehydratase, type 1, putative/shikimate 5-dehydrogenase, putative |
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| Protein accession | NP_972246 |
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| Protein GI | 42527148 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase
[COG0710] 3-dehydroquinate dehydratase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase
[TIGR01093] 3-dehydroquinate dehydratase, type I |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTACAA AGGTCTGTCT TGTTTTAACG GAAAAAACAA TCGAAAAAAA TCTTTCCGCA
CTGGAAAAGT ATAAGAAGTT TATTGATATT GCGGAGCTTC GTGTAGATTA TCTCAATCAA
AGCGAAATAC TCTATTTAAG GAATTTCCCT GAACGGGCCG GAATCCCTTG TATCTTAACC
GTTCGAAGAA AATCTGACGG CGGAAATTTT ACGGGAGGCG AAGGTGCAAG GATGACAATC
TTTGCACGCG GCCTTGCCTT TGCAAACGCC GACCCGATAA AAAATTTTTC TTATATAGAT
TTGGAAAGCG ATTTTGATTC ATCCGGAATC GAAGAAGCGG CAAGGGCCTT TGATATTAAA
ATAATAAGAA GCCTTCACAG TAAGGTTCCG GTAAAAAATA TAGTAAAGAC CGTAGAAGGG
TTAAGCCGTT TTGAAACCGA CATTCCCAAA TTGGCTTTTA CGGCAAATTG TTTAAACGAT
GTTTCCGAGC TTTTTAAAGC ATCAAAGCTG ATAAAAAACC AAGAGTACAT TTTATCGGTT
ATGGGGCCAT ACGGTTTAAG CTCCCGTATC CTATCAAATA AATTAAATTC CCAAATAGTA
TATACCTTCA CTCCCGAATA CATAAAGAAA AATAAACTTG AACAAGAACT TATAGATCCT
GAAACTTTAG AAGAATTATA CGGATTTTCA AAAATCGATG AGGAGACAAG TCTTTATGGA
GTTATAGGTA AGGATGTAAA CACAAGTTTG AGCCCCCAAA TTCATAATAA GGGTTTTAAA
CGAAAAAATC TTAATTCCGT TTATATCCCA ATATCGGCGG TGTCATCAAA GGAAGCCTTG
GACTTTGCCA ATCTTCTTAA GATAAAAGGT CTTTCCGTTA CGGCTCCTTT TAAAAGCGAA
ATCATTCCTC TGATAAATTC CATATCCGAA GCCTCTAAAT TTATCGGAGC CGTAAATACC
TTGGTAAGCG AAAACAAAAA ATGGTTCGGC TATAATACGG ATGTTGACGG TTTTCAGCAG
GCTTTAATGG AATTCTTAAA CGAAAAAGAC TTACGCAAAT ATAAGGTCGC TATTATAGGG
GCCGGAGGAG CAGCCAGAGC CGTCGCAGAA GTAATAAGCT CTCTCCATGG AAAAGCCTGT
ATCTTTAATC GTACGGCCGA AAAAGCTAAA AACATAGCCG AAAAATATAA ATTTAAATGG
GCACTATTGG ATCCTATAAA TATAAAACAG CTTCATGCTT TTTCGGAACT GATAATTCAA
ACCACAAATG CCGGTATGGA GCCCGACATA TATATGGACC CTCTTAATTT TTATACCTTT
ACAGGAAAAG AAAAAGTATT TGAGTTAATC TACAGGCCTG AAACCACTAA GATGTTAAAG
CGGGCAAGGA CGGCAGGATG TCAGGTTTGT AACGGCTATA AAATGCTTGA ATATCAAGCC
TATCATCAAT TTAAAGCTTT TGCAGGAAAG GAGTATTTAT AA
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| Protein sequence | MSTKVCLVLT EKTIEKNLSA LEKYKKFIDI AELRVDYLNQ SEILYLRNFP ERAGIPCILT
VRRKSDGGNF TGGEGARMTI FARGLAFANA DPIKNFSYID LESDFDSSGI EEAARAFDIK
IIRSLHSKVP VKNIVKTVEG LSRFETDIPK LAFTANCLND VSELFKASKL IKNQEYILSV
MGPYGLSSRI LSNKLNSQIV YTFTPEYIKK NKLEQELIDP ETLEELYGFS KIDEETSLYG
VIGKDVNTSL SPQIHNKGFK RKNLNSVYIP ISAVSSKEAL DFANLLKIKG LSVTAPFKSE
IIPLINSISE ASKFIGAVNT LVSENKKWFG YNTDVDGFQQ ALMEFLNEKD LRKYKVAIIG
AGGAARAVAE VISSLHGKAC IFNRTAEKAK NIAEKYKFKW ALLDPINIKQ LHAFSELIIQ
TTNAGMEPDI YMDPLNFYTF TGKEKVFELI YRPETTKMLK RARTAGCQVC NGYKMLEYQA
YHQFKAFAGK EYL
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