| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1560 |
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| Symbol | |
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| ID | 2739310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | + |
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| Start bp | 1611590 |
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| End bp | 1614970 |
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| Gene Length | 3381 bp |
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| Protein Length | 1126 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637160442 |
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| Product | YD repeat-containing protein |
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| Protein accession | NP_972166 |
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| Protein GI | 42527068 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTAA AACCTTGTAT TTATTCACAA CCTAACTATC TCACTTCTCG GACAGCGATT
GAAGCAGAAA TCCTTTTTGC GGTGTGTTTA AGCAAAAAGC AAGCTCTGAC CGGAGGGAAG
AGCCTTGCCT GTGAAGACAA ATGCAGCAAA AAGATTGGAG CGGAAAGCGC GGTGTTCAAT
TTTGTTTTCT TCGTAATGCT AAAAAACAAA ATTGAGCAGT CCGCCAAAAC AAACTCATTA
CTAGACAGCC CCACTGACAT GCCTTTTGGA AATAGGTGGA GCAGATACAA GGAGCCTAGT
AAAAATAAAG CGGAGGCGTA TCGGGTATAC GTCGAGCATT TATTTTTACG TAGCGACGCA
GGAGATGCCC GCATATTTTC AAAAGAGGTA ATTCACGACG GTCTGGGAAG AATAAGCTAC
ACAGCCAAAG AAGGAGAAGT GTACATTGAC GGAACGAATG ATCAAACCCA AACGGGCTGG
AACATCTCAA GTGTAATCAA CTACGACAAG GCAGGACGAA AGAGTGAAGA AGGAATGCCC
TTCTTTTACG GAGGGAACTT AGAACAAGAA CTGGTAAATA AAAACTCTTA TCAAGCCCTT
GAATCTTTTT ACGAACTAAA TAATTTTACA ACGATAAGAA ACGGAACAAA ATACGAATAT
GACGACATTG ACCGAAATAT CCTAACCACG CTTCCAGATG GCCACACACA AAAAACGGAA
TACTCGATAG ACTCTTCTTT ACAAATAACA AAGGCAACCG ACCCGAAAGA AAACATAAGC
ATAAGCAAAA AAGATGCACG GGGAAACATA CGGGAAGTAG AACGCTTAGA TAAAAATAAT
AGCCTCCTTA CAAAGGCAAG ATACGAATAT TCGGTGTTAG GAGAAATGCT AAAAGCCTAC
GATGCTAAAG ACAACTTATT GGCGGTAAAC TATGATATGT TAGGACGGCG AATAAGTTTA
GAAAGCAAGG ACACAGGCAA AAAAGAATGG ATATATGATG ATAAGGGCCG GCTTTACGCA
GAAACGGACT CAGTATTAAA AAACAAAGCT GCCGAAATAA GATATGAATA CGACGGCTTT
GACCGCATAA TAAAGACAGA CTATCCTTTT AGCCAAGACA TAGAATATAA ATACGGAGCG
CCGGGACAAA AAGGAGCAGG GCAAGTAGTC TACAAAAAAG ATGAGACGGG AGAAACGCAT
TATAGTTACG GAAACTTAAA CGAGGTAATA AAAGAAACAA GAACGATAAA CCGCTATGGA
GCGGGAACTA ATCCTGAAAC TGCAAGCTTT GAATACCGCT CGGACTACCT TGGCCGAATG
CAGAGTATGA AATACCCTGA CGGAGAAACC ATAACCTACA CCTACGATAA AGGCGGACAG
CTCAAGGGAG TGAGCGGAGC AAAAACTACA AACAAGGGTA GTATAAAATA CTCCTACGTC
GATAAAATCC TATATGACGA ACACGCACAA AGAGTATATA TAAAGTATGG AAACGGCGTA
GAAACACGGT ACAAATATGA TGAAAAACGA AGATGGCTTG ATACAATAGA AACAAAGAAT
AACCAAACTC AGGATATCTT CCAAAAAATA AAGTACTCAT TTGACCCTGT AGGAAACGTA
CGAGGTTATA ATAACGACGC AACTACCTAC GAAACACAAC AAACATATTC TTATGACAAC
TTGTACCAAC TGATAAGCGT AGAAGGAACA AGCAACCAAT ACAAGGGTAA AAAGAGCTTC
GGAGCAACGC CGGTAAGTAT TGCAAAATAT AAACAAACCT TTAGCTTTGA CAATATAGGC
AACATGACCA ATAAGCTAAG TACTACCAAC ATACCCGGTT CCCAAGGAAA CTCGTATCCC
AAAGCAGAAC TTGATTACAG CCTCGACTAC GAATACGATC CGGCTTACGC TCATCGACTA
ATCCATGCAG GCACCCGATA CTACCGCTAC GACGCGAACG GCAACATAAC GGCAGAAAAA
GACGGACCTT TTACGGATGA AGAAGAATTT ACCTTTACCT ACTCATATTT TGAAAATGAA
GACGTCTACG GTACCGACTA CGGCTTCGGC CTTGACGCTC CGAAAGAAAC CGAGCAGACA
AACCCGCAAG ACCTCTTTGC TTACAGGCGT AACTACACAT GGAATGAGCG TAACTTATTA
ACAAAATCAA GCGACCGCAA CTTTACCGTA CACTACCGCT ACGGAGACGA TGGACAGAGG
GCACTTAAGT ATACCGATGA GGGAAGAAGC GAAACCTTAT ACTTCAATAA CTTTTTCACG
ATACATATCC CGACGCAAGA TCAAAACAAC CCGCAAGGCT TAAGGGTGCA TAAACATATC
TTTGTCGGTA ACAGCCGCCT TGTAACGGCA ATGACACATA CCGATAACAG TGGAGACAAC
GAAGAACAAA AAGCAAAACG GTACTACTAT CATTCAGATC ACCTCGGCAG TGCACAGTTC
GTAACAGACT GGAAAGGTAG GCAGTATGAA CATATAGAGT ATACACCCTA CGGAGAACTA
TGGATAGAGG AAGTTGCCGC AGGGCTGGAT AAACTGCCCT TTAGGTTTAC GGGAAAAGAG
CTTGACGAGG AGACGGGACT GTACTACTAC GGTGCGAGGT ATCTTGATCC GAAGTATTCA
AGGTGGTTAA GCGGGGATCC GGCATTAGGT GAGTATATAC CGCAAGCGCC GGTAAATGAC
GAAGCCAAAA AGCACAACGA GAACTTACCC GGAATAGGCG GAGTGTTTAA TACCGTAAAT
CTTCACGTTT ATCATTATGC GGGGAATAAT CCGGTAAAGT ATGTGGACCC AACAGGCCGT
ACGACAGAAG ATGGTGCTGA AGTTACTGTT ATAATTTATT ACAATAGAAA AGATCAAATA
GCTTTTAAAA AAGCTGCTGA AACCGCAGCT AAGTCTTATT CAAATCAAGA TAATACCTAT
TTGATTGAGG TTTATACTGC CGATGAGTTT AAATCTCAAT GGAGTTGGCT GAATGTTTAT
TTTGAAGTAA ATAATATAGA AGTTGACAAT ATGGAGATTT TTTGTCATGG AGATGCTGAG
AATTTATACT TTAAAGGAGG TAATTTATCT GTCAGTGATG TAAGTTTTTT AGATGATTTT
TCTTTTTCAA AAAATGCTCA AATGATACTA CATTCCTGTA ACAGTGGGTC TTCTGATTCT
GGAATATCAC AAGCTTTTGC AAATAAGGAA AATATTACAG TATCTGGACA AACCGGATAT
GCTAACTTTT CCTCTGCATT TGAAAAATTT AGATTTATTT TTTTTGCTTC TTCAATTTAT
TTGGAAGCTT ATAACAGAAC AAAAAATAAT CCTAAGGGAG ATGGTACAAG ACTTCCAAGA
AGGAATTATC GAAAGGAATA A
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| Protein sequence | MKLKPCIYSQ PNYLTSRTAI EAEILFAVCL SKKQALTGGK SLACEDKCSK KIGAESAVFN
FVFFVMLKNK IEQSAKTNSL LDSPTDMPFG NRWSRYKEPS KNKAEAYRVY VEHLFLRSDA
GDARIFSKEV IHDGLGRISY TAKEGEVYID GTNDQTQTGW NISSVINYDK AGRKSEEGMP
FFYGGNLEQE LVNKNSYQAL ESFYELNNFT TIRNGTKYEY DDIDRNILTT LPDGHTQKTE
YSIDSSLQIT KATDPKENIS ISKKDARGNI REVERLDKNN SLLTKARYEY SVLGEMLKAY
DAKDNLLAVN YDMLGRRISL ESKDTGKKEW IYDDKGRLYA ETDSVLKNKA AEIRYEYDGF
DRIIKTDYPF SQDIEYKYGA PGQKGAGQVV YKKDETGETH YSYGNLNEVI KETRTINRYG
AGTNPETASF EYRSDYLGRM QSMKYPDGET ITYTYDKGGQ LKGVSGAKTT NKGSIKYSYV
DKILYDEHAQ RVYIKYGNGV ETRYKYDEKR RWLDTIETKN NQTQDIFQKI KYSFDPVGNV
RGYNNDATTY ETQQTYSYDN LYQLISVEGT SNQYKGKKSF GATPVSIAKY KQTFSFDNIG
NMTNKLSTTN IPGSQGNSYP KAELDYSLDY EYDPAYAHRL IHAGTRYYRY DANGNITAEK
DGPFTDEEEF TFTYSYFENE DVYGTDYGFG LDAPKETEQT NPQDLFAYRR NYTWNERNLL
TKSSDRNFTV HYRYGDDGQR ALKYTDEGRS ETLYFNNFFT IHIPTQDQNN PQGLRVHKHI
FVGNSRLVTA MTHTDNSGDN EEQKAKRYYY HSDHLGSAQF VTDWKGRQYE HIEYTPYGEL
WIEEVAAGLD KLPFRFTGKE LDEETGLYYY GARYLDPKYS RWLSGDPALG EYIPQAPVND
EAKKHNENLP GIGGVFNTVN LHVYHYAGNN PVKYVDPTGR TTEDGAEVTV IIYYNRKDQI
AFKKAAETAA KSYSNQDNTY LIEVYTADEF KSQWSWLNVY FEVNNIEVDN MEIFCHGDAE
NLYFKGGNLS VSDVSFLDDF SFSKNAQMIL HSCNSGSSDS GISQAFANKE NITVSGQTGY
ANFSSAFEKF RFIFFASSIY LEAYNRTKNN PKGDGTRLPR RNYRKE
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