| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1543 |
|---|
| Symbol | |
|---|
| ID | 2740905 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 1586208 |
|---|
| End bp | 1587230 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 637160425 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_972149 |
|---|
| Protein GI | 42527051 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1559] Predicted periplasmic solute-binding protein |
|---|
| TIGRFAM ID | [TIGR00247] conserved hypothetical protein, YceG family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA AATCAAAGAT TGTCATAATA ATATTGTGTA TAGCCGGCCT TCTTGCCGGT
ACAATATTTT TTGTTTTGTC GCTTAATAAT CCCCCTTTAG AATTTTCAGA ACCGCTTGTA
ACATTTAAAA TACCGCGCGG TACTGCCGCA AAAACGGTTA TTGGTGAGTT AAAAGCTAAA
AATCTTATAC GCTCGGAGCT TTATGCCTAT GCCTATCTTA GGCTTAAAAA ACTTAATTTA
AAGGCCGGCA CATATCAAAT AAGGCCCGAA ATGACCACCC ATGATATTTT ACATAAGCTG
ACCCAAGGCT CTCAAGCCCT TAAAAAGCTT ACAATACCTG AGGGCTTAAC TCTAAAAAAG
ACGGCTCAAG TTTTCGAAAC TGTAGGTCTT ATAAAAGCTG AAGACTTTAT TGCAATAACT
TCCGATTCCG ATTTTTTAGA AAAAAACGAA ATTAAGGCAA AAACAGCCGA GGGCTTTTTA
TATCCGGATA CCTATTTTTT CGGAGAAGAA GATACGCCTG AGATGATGGT AAAAATGATT
ATAAAAACTT TTTTTGAAAA AACTTCATCC ATTCCGAATT TTCCTAAAGA TTTTAACGAA
ATTTATAAAA AGGTGATTTT GGCCAGCATT ATTGAAAGAG AGTATCAGCT TCCTGAAGAA
GCTCCTATAA TTTCAAGCGT TTTTACTAAC CGCCTTAAAA TAAATATGGG ACTTCAATCA
TGTGCAACCG TTGAATACAT AATCACCGAA ATCAAAAATA AAAAGCATCC TACTCGGCTT
TTTTATGAAG ACTTGGAAAT TCAAAGTCCT TACAATACCT ACATCCATGA AGGCCTTCCG
CCGGGGCCTA TTTCGAACCC CGGATTTACG GCCTTAAATG CTGCCTGTAA TCCCGCAAAT
ACGGATTATT TTTATTTCAG ACTGATCGAT CCGGATACCG GAAAGCATGT ATTTACAAAA
ACCATAACTG AGCATAATAA GGCCGGAGAA GGTCTTTTAT TAAAAAAAGC CGCCGGTCAA
TAA
|
|---|
| Protein sequence | MKKKSKIVII ILCIAGLLAG TIFFVLSLNN PPLEFSEPLV TFKIPRGTAA KTVIGELKAK
NLIRSELYAY AYLRLKKLNL KAGTYQIRPE MTTHDILHKL TQGSQALKKL TIPEGLTLKK
TAQVFETVGL IKAEDFIAIT SDSDFLEKNE IKAKTAEGFL YPDTYFFGEE DTPEMMVKMI
IKTFFEKTSS IPNFPKDFNE IYKKVILASI IEREYQLPEE APIISSVFTN RLKINMGLQS
CATVEYIITE IKNKKHPTRL FYEDLEIQSP YNTYIHEGLP PGPISNPGFT ALNAACNPAN
TDYFYFRLID PDTGKHVFTK TITEHNKAGE GLLLKKAAGQ
|
|---|
| |