Gene TDE1515 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1515 
Symbol 
ID2739721 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand+ 
Start bp1562118 
End bp1563239 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content39% 
IMG OID637160395 
Productpermease domain protein 
Protein accessionNP_972121 
Protein GI42527023 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4591] ABC-type transport system, involved in lipoprotein release, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.000964832 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATTTTA AAATGATAAT GAGTTCTTTA TTGCGGCGCC GTTCAAGAAT GTTGGTGGCT 
TTAATGGCTA TTGCAATCGG CTCAACCGTT TTATCGGGCT TATTGACAAT TTACTACGAC 
ATTCCGCGGC AGATGGGAAC GGTGTTCCGC TCATACGGGG CAAATATGAT ATTTCTTCCT 
TCCGAAAGCG ATGCAAAAAT AAAAAAAGAG CAAATCGATA AAATAAAAAA AGAAATCGAC 
TCAGGTAAAC TTGTAGGTTT TGCCCCTTAT ATTTATAAAC CTGCAAAGGT AAACGAGCAG 
CCCTATATGA TAGCAGCTAC CGATCTTATA AGCGCAAAGA ACAATAGTCC CTATTGGCTT 
GTACGCGGAC AATGGCCTGA CAAAAAAAAG GAAGTTTTAA TAGGCCATGA AATAAGTAAG 
GCTATAGGTT TATCTATAGG AGATAATTTT ATTGTAAACA CTCCGAAACC TGACGGAGAT 
GTAACCGTAA ACGAGTTTAA GGTTTCGGGC ATAGTTACAA CAGGGGGTGT CGAAGAAGAA 
TTTATCTTTA TGAGCCTTGA GGATATAAAA AATATTGTCG GCTATAATGA TGCCTTCGAT 
GTAATTGAGT GCAGTATTGA CGGAAACAGG GATTATCTTA ATTTAATTGC CGAAAAAGTT 
TCAAATGATG TAAAAGGTAT TACCCCCCGT CTTGTAAAGC GTGTTACCGA ATCTCAGGAT 
ACGGTTTTAA GTAAACTTCA GGCCCTTGTT TGGATAGTTA CCATTATTGT TTTGTTTTTG 
ACTATGATAT GTGTAACCAC TACCATGATG GCCGTAGTTG TGGAACGCAG AAAAGAAATA 
GGCTTAAAAA AAGCTTTAGG TGCTTCAAAT AAAAGTGTTG TTATAGATTT TTTGGGAGAA 
GCGGTTATGC TTGGGCTCAT GGGCGGTATT TTAGGAATAG GGCTCGGTTA CTTATTTGCA 
AATAATGTAA GTATAAGTGT TTTTGCAAGA GAAGTTTCCT TTCCCATAAG GCTGGCACCT 
TTTACCGTAA TTTCTTCCAT AGTTATAACT ATTGTAGCCT CCCTCTTTCC CGTAAGGGCA 
ACTGTGGATG TGGACCCAGC TCTTGTTTTG CGCGGAGAGT AA
 
Protein sequence
MYFKMIMSSL LRRRSRMLVA LMAIAIGSTV LSGLLTIYYD IPRQMGTVFR SYGANMIFLP 
SESDAKIKKE QIDKIKKEID SGKLVGFAPY IYKPAKVNEQ PYMIAATDLI SAKNNSPYWL 
VRGQWPDKKK EVLIGHEISK AIGLSIGDNF IVNTPKPDGD VTVNEFKVSG IVTTGGVEEE 
FIFMSLEDIK NIVGYNDAFD VIECSIDGNR DYLNLIAEKV SNDVKGITPR LVKRVTESQD 
TVLSKLQALV WIVTIIVLFL TMICVTTTMM AVVVERRKEI GLKKALGASN KSVVIDFLGE 
AVMLGLMGGI LGIGLGYLFA NNVSISVFAR EVSFPIRLAP FTVISSIVIT IVASLFPVRA 
TVDVDPALVL RGE