| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1503 |
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| Symbol | rho |
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| ID | 2739904 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | + |
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| Start bp | 1551807 |
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| End bp | 1553453 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637160383 |
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| Product | transcription termination factor Rho |
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| Protein accession | NP_972109 |
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| Protein GI | 42527011 |
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| COG category | [K] Transcription |
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| COG ID | [COG1158] Transcription termination factor |
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| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000037905 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAATAA GAAAAAGAAA AACTTTGCCG CAGGTTTCTG AGGATACCTT GTTTGATACG
GGGATTAATT CTGATGAAAA CTTAGGTCTT AGCCAATCCG ATGTACAGGC TGATGATCCA
TCCCTTAGTC CGGCAAATGA GATTCAAGCT GCTGTAGAGC AGACAAGAAT TGAGCAAAAC
AATGAAGCAG ACGATGAAGT TCTTGAAAAA AAAGTTGTTG TCCGCTCCCG CGGAAGAAAA
AAAACAGAAA GCTTTTCAGA TGAAGTTGAA ACCAAACCGG CAAAAAGAAC TAGTGTAACT
GCAAAAAAAC GTATACCTAA AGATATTCAA GAAGAAAAAG AAGAAGTCCC GCCCGCATCA
GATAGTTCTT TTAAAATCAT AATAAACGAT CTTACAAAGA TGCGTATGCA TGATTTAAGA
GATATGGCCA TTAAATACGG CGTACCGGAG GATGAACTTT CCTTAATGAA AAAACAGGAT
GTGATTTACC ACATTCTTAA AAACCATACC AATCAGGGCG GTACTATTTT CGCTTCCGGT
TCTTTAGAGA CCCTTCCTGA CGGATACGGT TTTTTACGTT CGCCTCAAAA CAGCTATTTG
ACGGGAACTG ATGACGTCTA TGTATCTCCC AGCCAGATAA GGCTTTTTAA TCTTAAAACG
GGTGATACGG TTTACGGCCA AATTCGCTCC CCAAAAGAGG GTGAAAGATA TTTCGCTCTT
TTAAGGGTTG AAACGGTCAA CTTTGATGAG CCTGCAAAAT CGCAGCGCCG TATTCCGTTT
GATAACCTCA CCCCCCTTTA TCCTAGAGAA AAATTAAACC TTGAAACAAC TACTCAGGAA
ATATCTACCC GAATTATGAA TCTTTTTTGT CCGATAGGAA AAGGACAGAG AGGATTGATT
GTAGCTCCTC CTCGTACGGG AAAAACGATA ATGCTTCAAA AGATAGCCAA TGCAATTACG
GCCAATCATC CTGAAGTTTA TCTTATAGTT CTTTTGATAG ATGAACGTCC TGAAGAAGTT
ACCGATATGG AGCGCACTGT AAATGCGGAA GTTATTTCTT CTACCTTCGA TGAGCAGGCA
ACCCGCCATG TTCAAGTTGC TGAAATGGTA CTTGAAAAGG CAAAACGCCT TGTTGAACAC
AAGAGGGATG TAGTTATTCT TTTGGATTCA ATTACCCGTT TGGCAAGGGC CTATAACCAG
ACAATGCCTA CTTCGGGTAA GGTTCTATCC GGAGGTGTGG ATTCAAACTC TCTTCATAAG
CCTAAACGCT TTTTCGGTGC CGCAAGAAAT ATCGAAGAAG GCGGAAGTTT AACGATAATA
GCTACGGCTC TTATTGAAAC CGGCAGCAAG ATGGACGAGG TTATTTTTGA AGAATTTAAG
GGAACTGGCA ATATGGAAGT AAACCTGGAC AGAAAGCTTT CAGACCGCCG TTTATTCCCT
GCAATCAATA TAAAGCGATC GGGAACTCGA AAAGAAGAGC TTTTATTAAC GGAAGCAGAA
ATGCAGCTTA TGTGGATATT ACGCAAATTC ATCAGCTCGA TGGATGATGC CGATATTATC
GAATTCTTAA TAGATAAAAT GAATAAGAGC AAGAATAATG AAGCGTTCTT AAAATCAATG
AATGCCGGTC TTGCACAAAA AGAGTAA
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| Protein sequence | MTIRKRKTLP QVSEDTLFDT GINSDENLGL SQSDVQADDP SLSPANEIQA AVEQTRIEQN
NEADDEVLEK KVVVRSRGRK KTESFSDEVE TKPAKRTSVT AKKRIPKDIQ EEKEEVPPAS
DSSFKIIIND LTKMRMHDLR DMAIKYGVPE DELSLMKKQD VIYHILKNHT NQGGTIFASG
SLETLPDGYG FLRSPQNSYL TGTDDVYVSP SQIRLFNLKT GDTVYGQIRS PKEGERYFAL
LRVETVNFDE PAKSQRRIPF DNLTPLYPRE KLNLETTTQE ISTRIMNLFC PIGKGQRGLI
VAPPRTGKTI MLQKIANAIT ANHPEVYLIV LLIDERPEEV TDMERTVNAE VISSTFDEQA
TRHVQVAEMV LEKAKRLVEH KRDVVILLDS ITRLARAYNQ TMPTSGKVLS GGVDSNSLHK
PKRFFGAARN IEEGGSLTII ATALIETGSK MDEVIFEEFK GTGNMEVNLD RKLSDRRLFP
AINIKRSGTR KEELLLTEAE MQLMWILRKF ISSMDDADII EFLIDKMNKS KNNEAFLKSM
NAGLAQKE
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