| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1487 |
|---|
| Symbol | |
|---|
| ID | 2739888 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 1530845 |
|---|
| End bp | 1531588 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637160366 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_972093 |
|---|
| Protein GI | 42526995 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0217] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01033] DNA-binding regulatory protein, YebC/PmpR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000223264 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGAC ATAGTAAATG GGCGACAATT AAACATGCCA AGGGCGCAGC TGATGCTAAA
AGAGGTCAGC TGTTTACTAA ATTTATCAAA GAAATTTCAA TTGCTGCAAA AATGGGAGGC
GGAGATCCGG CTACTAACCC AAGACTTAGA ACAGCTGTTT TAAAAGCTCG TGCTGCAAAC
ATGCCTAAAG ACAACATAGA AAGAGCAATT AAGAAGGGTA CAGGAGAGCT TGGAGCTGTA
AACTATGAGG AGCTTTTGTA TGAAGGCTAC GGCCCCGGCG GAGTTGCCGT TTTGGTTGAA
GTTTTAACGG ACAACAAAAA CAGAACAGCA GCCAGTGTTC GAAATATTTT TACAAAGAGC
GGCGGAAACT TGGGTGCAAC AGGTTCCGTA GCTTATATGT TTAACCGAAA AGGTGTTATA
GAGTATGATG CCGAGGTGGT CAGTGAAGAA GCAATTATGG AAGCTGCTCT TGAGGCAGGA
GCCGAAGATA TTGCGACTGA AGACGGTGTT ATTACCGTAA CAACCGATCC CAACGACTTT
GCTTCGGTTC TTGAAGCTTT ACAGGAAAAA GGCTTTGAAT CCGTATCTGC TGCCGTATCG
ATGGTTCCCG ATACCTATGT AGCCTTAGAT GCCGATACAA CTCAAAAAGC CTTAAAGATG
ATCGATAAGT TGGAAGAAGA TGATGATGTT CAGACCGTTT CCTCAAATAT CGAAATCCCC
GAAGGCTTTG AAATGCCGGA ATAA
|
|---|
| Protein sequence | MSGHSKWATI KHAKGAADAK RGQLFTKFIK EISIAAKMGG GDPATNPRLR TAVLKARAAN
MPKDNIERAI KKGTGELGAV NYEELLYEGY GPGGVAVLVE VLTDNKNRTA ASVRNIFTKS
GGNLGATGSV AYMFNRKGVI EYDAEVVSEE AIMEAALEAG AEDIATEDGV ITVTTDPNDF
ASVLEALQEK GFESVSAAVS MVPDTYVALD ADTTQKALKM IDKLEEDDDV QTVSSNIEIP
EGFEMPE
|
|---|
| |