Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TDE1387 |
Symbol | |
ID | 2741148 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Treponema denticola ATCC 35405 |
Kingdom | Bacteria |
Replicon accession | NC_002967 |
Strand | - |
Start bp | 1426905 |
End bp | 1427822 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 637160266 |
Product | RNA pseudouridylate synthase family protein |
Protein accession | NP_971993 |
Protein GI | 42526895 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAAAG AAAATAAGAT TTTTTATATA GGCGAAGATG ATTCAGGCAG GAGACTGGAC CGTGTAATAC GAAAATTTTT AGGAAAGATG CCCCTTTCCG GCGTATATTC GGCAATACGC AGAGGGAAGA TAAGGGTCAA CGGTAAAAAA GAAAACGGAG CCTACTTAAC CCAAAAAGGC GATGAAATTT CAATGGATTT GAGCCTATTC GGCTTAACTG CACCCGCATC AGAAGATCAA ACAAATTATT CAATTTCAAA ACCTGACGTT CTATTAAAAA CCGATGATTT ACTCTTTATA AACAAAAGAT CCGGAGAGCT TGTACATGGA GAAAAAAGTC TTTGTGAGGC TGTTTTAAAA TATTTTCCGT CAAAAGAAAA AAGTCTTTCC TTTAAAGTAG GAGCCCTGCA TAGACTGGAT AAGGATACAA GCGGAATTCT GGCCTTTTCT CAAAGTTTAA AAGGAGCACA GGGATTTTCA AGGGCCCTGC AGGAAGGAAA GATAGGTAAA TTTTACATCG GAATAACTGA GGGGCGCCCT TCTTTAAGCG AATTTAAAAG CATAATCGAC GGAAAAGAAT GTCTTTGTCT TATAAGAATT CTTGATTTTT CAAAAGAAGA AAATTTAAGT CTTGTGCTTT TTAATCTTAT AACCGGAAGG AAGCACCAAA TAAGAATACA ATGCTCTCAG TTCGGCACTC CCCTTTTAAA CGATAAAAAA TACGGCTCAA AACAAAAAAA AGCATTTTCT GAAGATTTAT CAAAAAAAAC TACATATTTT TTACATGCCT ATAAGTTAAT ATTTTCGGAA CCGTTTTTAG ACGACTTACC AAAGGAGATT ACCGCCCCCC TTCCCGAAAA CTTTAAGAGG GCGGTCAAAA GTTTATTTGG TATAGATTTG GCAAGCTTAA AAACTTAG
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Protein sequence | MSKENKIFYI GEDDSGRRLD RVIRKFLGKM PLSGVYSAIR RGKIRVNGKK ENGAYLTQKG DEISMDLSLF GLTAPASEDQ TNYSISKPDV LLKTDDLLFI NKRSGELVHG EKSLCEAVLK YFPSKEKSLS FKVGALHRLD KDTSGILAFS QSLKGAQGFS RALQEGKIGK FYIGITEGRP SLSEFKSIID GKECLCLIRI LDFSKEENLS LVLFNLITGR KHQIRIQCSQ FGTPLLNDKK YGSKQKKAFS EDLSKKTTYF LHAYKLIFSE PFLDDLPKEI TAPLPENFKR AVKSLFGIDL ASLKT
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