| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1371 |
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| Symbol | |
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| ID | 2741132 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | - |
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| Start bp | 1413388 |
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| End bp | 1415259 |
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| Gene Length | 1872 bp |
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| Protein Length | 623 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637160250 |
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| Product | RNB-like family protein |
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| Protein accession | NP_971977 |
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| Protein GI | 42526879 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACAA ATGCAATCGT CTTATATAAA AACCGTCCGG CTCTTATAAA AGGACAGGCT
GACGGAAAAT TTGAAATAGA AACGGAAACG GGCATCAAAA AGGTGCGCGA AAAAGATTTT
TCCGTTTTGG CTCCAAGTAA CTCCTCATCG CTAAAAAACA TTTTGACCGC TGCTTGTCCC
GAACCTGACT TTAATGAAGC CGCCGACTTT TTTGAAGAAG GAACAGCCCT CTTCTCTGAA
ATAAGCGAAT TGGTTTGGGA AAATTTAAAT CCCGAACAAA TGTGGGCAGC TTGGCTTTTA
GTTTCGGCAT CTCCTCTTTT TATTGCAGAA AGCCCTGACC TTCCGATTAA GATAAGAACA
AAAGAAGAAG CTGAGTCCAT AGCCGCTGCA GCACTAAAAA AAGAAACCGA AAAACAAGCG
GAAGAGCAAG AGCGGAAAGA ATTTATAAGC AGCTTATCAA AATTTATAAA AGAAAAAAAG
GAAGAAAATT TCGACTTAAA AAAATATTCT CACTTTTTGC AGGAAATAGA AGCTCTTGCC
TTGGAAAAAA CCGACAAGTC AAAACTTTTA AATGAAGCTC ACTTAAAAGA AACTCCTGAA
TCTGCTCATA AGATTTTAAT TAGTACAGGT TATTGGAAAA TAGAAAAAAA CCCCTACCCC
ACCCGCTTTA AGCATCCTTT AAATTCGCCG AAGCTGGAAT TGCCTCCTAT CGAGCATAAC
AAAAAATACG AAGACCTGAC TCATCTTACC TCCTATGCAA TCGACAACGA GGGCAGCACC
GATCCCGACG ATGCCGTATG CTTTGACGGA GAAAACTTAT GGATTCACAT TGCAAACCCT
GCCGACATAA TTACCCCCGA TTCCAAAAGC GATATGGACG CAAGGAAACG GGGTGCGACC
CTTTACATTC CTGAAGGCGT ATCCCGAATG TTGGGAGAAT CGGCAGTCGA TGCCTTTGCC
CTCGGCCTGC ATGATGACTC TTATGCCCTG TCGTTTAAAC TTAAGCTAAA TGACTCGGCT
GAAATTCTCG ATGTAGATAT TTTGCGTACC AAAATAAAAG TAAGCTGTAT AAGTTTTGAA
AAGGCCGATG AAGAAAAGAT GAATACAAAC CTAAAACATC TTTTTGAAAT AGCAGAAAAA
AACAGAAAAA AACGGGAAGC GGCAGGAGCT GTTTCGATAG ATATGCCCGA AGTTCAAATC
AAGGTAGAAA CCGAAAATGA GAACCAAAAA GTTTTTATAA GCCCGTATAA TTTTACGGAA
TCTTTTTTGA TGATAAAGGA AATGATGCTC CTTGCAGGAG AGGCCGCTGC CCGCTTTGCT
TTTAAAAACA ATATTCCCTT TCAGTATGTA AGTCAGGAAG CACCCGAATT ACCGAAAAAA
CTTCCCGAAG GTCTTGCGGG CGAATACCGA AAAAGAAAAG CTATGAGGCC GAGAAATGTG
GGTACAATTC CTGCAATGCA TTCAGCCCTC GGAATTGCAA TGTACAGTCA AATTACAAGC
CCCCTCCGCC GCTATGGAGA CTTGGTTGCC CATCAACAGC TTTTAAAATT TATCGACGGA
AAAGAGGTGA TGAAAACCGA TGACCTTCTT ATGAGAATAG CGGCGGGAGA CATTGCAGGC
AAAAATTGTT CCTATGCTGA AAGAGCCTCG CGTCAACACT GGACTCTGAT CTATCTATTA
CAAAACCCTG ACTGGCAAGG AGAAGCAGTA ATCTTAGAAA CAATAAAAAA TACTGCTCGC
ATTTCCATTC CGTCTATCGG CTATGAAACC GAAATGAGAT TAAAAAAAGA ATTATCGATT
AACGAACGCA TAAATGTAAA AGCCGAGGAT ATAGATATTC CGAATCTGAC TGTAAGATTT
GTGCAGGTGT AA
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| Protein sequence | MNTNAIVLYK NRPALIKGQA DGKFEIETET GIKKVREKDF SVLAPSNSSS LKNILTAACP
EPDFNEAADF FEEGTALFSE ISELVWENLN PEQMWAAWLL VSASPLFIAE SPDLPIKIRT
KEEAESIAAA ALKKETEKQA EEQERKEFIS SLSKFIKEKK EENFDLKKYS HFLQEIEALA
LEKTDKSKLL NEAHLKETPE SAHKILISTG YWKIEKNPYP TRFKHPLNSP KLELPPIEHN
KKYEDLTHLT SYAIDNEGST DPDDAVCFDG ENLWIHIANP ADIITPDSKS DMDARKRGAT
LYIPEGVSRM LGESAVDAFA LGLHDDSYAL SFKLKLNDSA EILDVDILRT KIKVSCISFE
KADEEKMNTN LKHLFEIAEK NRKKREAAGA VSIDMPEVQI KVETENENQK VFISPYNFTE
SFLMIKEMML LAGEAAARFA FKNNIPFQYV SQEAPELPKK LPEGLAGEYR KRKAMRPRNV
GTIPAMHSAL GIAMYSQITS PLRRYGDLVA HQQLLKFIDG KEVMKTDDLL MRIAAGDIAG
KNCSYAERAS RQHWTLIYLL QNPDWQGEAV ILETIKNTAR ISIPSIGYET EMRLKKELSI
NERINVKAED IDIPNLTVRF VQV
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