Gene TDE1346 details

Gene Information

• Locus tag: TDE1346
• ID: 2739447
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 1385359
• End bp: 1387218
• Gene Length: 1860 bp
• Protein Length: 619 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 637160224
• Product: RNA polymerase sigma factor RpoD
• Protein accession: NP_971952
• Protein GI: 42526854
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTGATC TCGAAAAGAA TCCTGCGATT ATTAAACTTT TGGAATATGC CAAAAGGAAG 
CGCACAATAG GATTGGGTGA TCTTGATGAT CTACTGCCCG AAGACTTAAT GTCTCCGGAA 
ACTATACCTG ATATTCTGGA TATTTTGGAA GGTGCCGGCG TTCAAATAAA AAATGAAGGA 
ATATCCGAAT CCAATTCGGA ATCCGACTCC GATTCTCAGA GCGGCAATGA TGAAGACTAC 
CGATTATTGG ATGATACATA CGAAGAAGAG GATGACGATA TAAAAAGTCC TTATTCCGAT 
GAAATCGAGA CTCCATATAT CGAAAAAGAA AAGCCTAGGC ATGAAACGGC AAAAAAACTG 
GTTAGAACTT CTCACGAAGC CGGAGTTGAC GATCCGATTA AGCTTTATCT TCAAGAGATA 
GGCAAGGAAG ATCTTTTAAC TGCCGATGAA GAAGTATCTC TTTCAAAAAG TATGGAAGAC 
GGGGAAGCTA TCATAAAAAA GGTTATAAAA AATTCCGGTA TATTGATTCC AGAGTTTTTT 
GTAATCGGAC AAAAGGCTTT TTCAAAACTA GATCCCGCTG AGTCCAATAA GCCGCGCAAA 
GAGTTAAGTG AAGAAATGGC CGAAAAAAAG CGTCTCAAGC AGGTTTATGG GGACAGTCTA 
CGGAACATAT ATTCCGAAAT TAAACAATAT ATGTCCTTAA AAAAGCACTG TTATGATAGA 
GAAAGCTTGG AAAGCTTTTT GGAGAGCCCT GAACTTCAAG CTTTGCGAAA GAAGATGTTT 
AACAGTCTTA AACGTATTCA CATTGAATCG GAAGAAATAG AAAAAATTTC GGACCGCTTT 
ATTGAAGCTA CCGAAAAAGT GCAGGACTAC CAACACAAAA AAGAAAGAAA AGAAAAACAG 
CTTGGTATTA AAAGCTATGC CGATTTAAGA AAACTGGGTA AACGGCTTGC AATTCCGAGA 
GAAAGAGAAA AACTGGAAAA AGAGCTTAAT ATTTCGGCTA ATGAAGTAAA GGATATATAC 
ACTCAAATTC AGGTCTTGAC CCGAAAAATC CGAAAGATCG AATATGATTT TGAAGCTACT 
GTAGATGAAG TTATTGATCT CACTTCAGAG ATAAAGAACG GCCAGAGAAT GCTTAAAAAT 
GCAAAAGATA AGCTGATAAA TGCAAACTTG CGCCTTGTTG TTTCTATTGC TAAGAAGTAC 
ATCAACAGGG GATTACAGTT CTTTGATCTT GTGCAAGAGG GAAATATCGG GCTTATAAAA 
GCTGTTGAAA AGTTTGAGTA CAGGAAGGGA TATAAATTTT CTACCTATGC TACCTGGTGG 
ATAAGGCAGG CTATTACGCG TTCAATATCG GATCAGGCAC GTACGATAAG GGTTCCTGTC 
CACATGATAG AACAAATAAA CAAGGTAAAC AGGGAATCCC GCCAGCTTAT GCAAAAACTC 
GGCCGTGAAC CCAATGATGA TGAGATAGCC TTGCAGCTTG GCTGGTCGAT CGAAAAGGTT 
AAGCAGGTTA AAAATGTTGC AAGGGAGCCT ATCTCTCTTG AAACGCCCAT AGGTGAAGAA 
GAAGATACGC TCTTGGGAGA TTTAATCGAA GATAAGGGTG TTGAAAATCC TTCAAACAGA 
ACGGAGCTTA CTCTTTTGCA GGAGCAGCTT GAAATGGTGC TTTCGAGTTT GCCTGAGCGT 
GAGCAGGAAG TTTTAAAAAT GCGCTTCGGT ATTGAGGGCG GCTATCCTCT TACCCTTGAA 
GAAGTAGGCT TATATTTCGA CGTAACGCGT GAAAGAATAA GGCAAATAGA AGCAAAGGGA 
TTAAGACGGC TGCGCCATCC TAAACGTAGT AGAAAATTAA AAGATTATCT TGATAATTGA 

 

Protein sequence

MTDLEKNPAI IKLLEYAKRK RTIGLGDLDD LLPEDLMSPE TIPDILDILE GAGVQIKNEG 
ISESNSESDS DSQSGNDEDY RLLDDTYEEE DDDIKSPYSD EIETPYIEKE KPRHETAKKL 
VRTSHEAGVD DPIKLYLQEI GKEDLLTADE EVSLSKSMED GEAIIKKVIK NSGILIPEFF 
VIGQKAFSKL DPAESNKPRK ELSEEMAEKK RLKQVYGDSL RNIYSEIKQY MSLKKHCYDR 
ESLESFLESP ELQALRKKMF NSLKRIHIES EEIEKISDRF IEATEKVQDY QHKKERKEKQ 
LGIKSYADLR KLGKRLAIPR EREKLEKELN ISANEVKDIY TQIQVLTRKI RKIEYDFEAT 
VDEVIDLTSE IKNGQRMLKN AKDKLINANL RLVVSIAKKY INRGLQFFDL VQEGNIGLIK 
AVEKFEYRKG YKFSTYATWW IRQAITRSIS DQARTIRVPV HMIEQINKVN RESRQLMQKL 
GREPNDDEIA LQLGWSIEKV KQVKNVAREP ISLETPIGEE EDTLLGDLIE DKGVENPSNR 
TELTLLQEQL EMVLSSLPER EQEVLKMRFG IEGGYPLTLE EVGLYFDVTR ERIRQIEAKG 
LRRLRHPKRS RKLKDYLDN