Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TDE1331 |
Symbol | nrdD |
ID | 2741065 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Treponema denticola ATCC 35405 |
Kingdom | Bacteria |
Replicon accession | NC_002967 |
Strand | + |
Start bp | 1366008 |
End bp | 1368134 |
Gene Length | 2127 bp |
Protein Length | 708 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637160208 |
Product | anaerobic ribonucleoside triphosphate reductase |
Protein accession | NP_971937 |
Protein GI | 42526839 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type [TIGR02487] anaerobic ribonucleoside-triphosphate reductase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0843156 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAGGAAA AAACTACAAA TCAAACGGTT TTTCCTGAAT GGAAGTCCTT TTTAGGGACA ATGGAGAAGG CAAAGCCTGA AATTTTGCGC TCGGTAGTAA AACGTTCGGG AGAAATTGAG GCGTATAATC GAAAAAAAAT AGAACAGGCA ATCAATAAGG CTATAACCGC AGTTGAAGGC AGCCCAAATG ATGAAAAAGC TGTGTTTTTA ACGGACAAGG TCGAAGAAAA GCTTAAAAAT ATTATGGCAT CCCGTTATGC TCATTCTATT CCGGCAATAG AAGAGATTCA GGACGTTGTA GAGCTTGTTT TAATTGAACA GCAGGAAGCC CGTCTCGCAA AGGCCTATAT CCTTTACAGG GCAAAGAGGG AGGCCGTACG GGATGCGGAA AGCCTCATGC TGAATATAAA CAGCACCATG GACGGATATT TAAGTCAATC CGACTGGCGC GTAAAAGAAA ATGCCAACGT AAACTTTTCT TTAGGCGGTC TTATTCTCCA TAACTCAGGT ACTATTACGG CAAACTATTG GCTTAAAAAT ATTTATACAC CTGCCATTGC CGAAGCCCAT ATAACTGCAG CCTTTCATAT TCATGACCTT TCAATGTTTT CAGGCTACTG TGCAGGCTGG TCCCTTAGGC AGCTTATCCA TGAGGGCTTA GGCGGGGTTC CCGATAAGAT TACCTCAAAG CCTCCCAAGC ATTTATCGAC ACTTATTCAG CAGATAGTCA ACTTTTTAGG CATTATGCAG AACGAGTGGG CTGGAGCTCA AGCCTTCAGC TCCTTTGACA CATATTTGGC TCCCTTTGTA AAAAAAGATA AGATGAGTGA AGCCAACGTA AAACAGTGCC TTCAAAGCTT TGTTTACGGT GTAAACACTC CCAGCCGCTG GGGTTCTCAG GCTCCATTTA CGAATATAAC CTTGGACTGG GTATGTCCGC CCGACCTTGC AAACCAAAAG GCTGTTGTCG GGGGCGAAAC ACAGGATTTT ACATACGGTG ACTGTCAAAA AGAAATGGAT ATGATAAATA AGCTCTTTAT TGAACTTATG CTTGAAGGAG ATGCCGCAGG ACGAGGTTTC CAATATCCAA TTCCCACTTA CAATATAACC TCCGATTTTG ACTGGTCAAG TCCGAATGCA AAACTGCTTT TTGAGATGAC TGCCCGATAC GGTACGCCCT ATTTTCAAAA CTTTATAAAT TCCGACCTAA ATCCCGGGGA TGTGCGTTCC ATGTGCTGCC GTCTTCAACT CGATAAAAGG GAATTGCGTA AAAGAGGAGG CGGACTTTTC GGCTCCGATG AGTTTACAGG ATCCATAGGG GTAGTTACGA TAAATATGCC TCAAATCGGG TACCTGTCAA AAACCGAAAA GGACTACTTT GACCGCTTGG ACTACCTCAT GGACATCGCA AAGCAAAGCC TTGAGATAAA GCGGAAGGTA ATCGAAAAGC TACTGGAGGG AGGCCTTTTC CCGTATACAA AAAGGTATTT ACATCATCTA AACAATCACT TTTCGACTAT AGGAATTTGC GGTATGAACG AGTCCTGCCT AAACTTTTTG GGTGAAGATA TTGTAAGCCC GAGGGGAAAG GCCTTTGCCG AAAAGGTCTT AACCTATATG AGAAACCGCC TTGCAGACTT CCAAGAAGAA ACGGGCAGCT TATTCAATCT TGAAGCAACC CCGGCTGAAA GTACTTCTTA CAGACTGGCT CGCCACGATA AAAATCAGTT CCCCGATATA ATAAGTTCGG GAGATGCCGA GCCTTATTAC ACCAACTCAA GCCAGCTTCC CGTTGCCTAT ACTACCGATG TTTTTGAAGC CTTGGATCAT CAAGAAAGTT TACAGCGTAA GTATACGGGA GGCACGGTTT TTCACATATT CTTGGGTGAA TCTATCAAGG ATTGGGAATC TTGCAGGGAT TTGGTTAAGG CTGTTGCAAA CAATTACCGT ATTCCCTATT TTTCGATTTC GCCGACATTT TCGATATGTC CTGTTCACGG CTATCTTGAG GGCGAACATT TTGAGTGCCC TTATTGCAAG CGAGAAAAAC AGGCAAAACT TGAACTGAAA CTGGCCGAGC TTGAAAAAGA AAAGGCCGAG GTCTTGAGTG TTTCTTCTAA GATTTAA
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Protein sequence | MEEKTTNQTV FPEWKSFLGT MEKAKPEILR SVVKRSGEIE AYNRKKIEQA INKAITAVEG SPNDEKAVFL TDKVEEKLKN IMASRYAHSI PAIEEIQDVV ELVLIEQQEA RLAKAYILYR AKREAVRDAE SLMLNINSTM DGYLSQSDWR VKENANVNFS LGGLILHNSG TITANYWLKN IYTPAIAEAH ITAAFHIHDL SMFSGYCAGW SLRQLIHEGL GGVPDKITSK PPKHLSTLIQ QIVNFLGIMQ NEWAGAQAFS SFDTYLAPFV KKDKMSEANV KQCLQSFVYG VNTPSRWGSQ APFTNITLDW VCPPDLANQK AVVGGETQDF TYGDCQKEMD MINKLFIELM LEGDAAGRGF QYPIPTYNIT SDFDWSSPNA KLLFEMTARY GTPYFQNFIN SDLNPGDVRS MCCRLQLDKR ELRKRGGGLF GSDEFTGSIG VVTINMPQIG YLSKTEKDYF DRLDYLMDIA KQSLEIKRKV IEKLLEGGLF PYTKRYLHHL NNHFSTIGIC GMNESCLNFL GEDIVSPRGK AFAEKVLTYM RNRLADFQEE TGSLFNLEAT PAESTSYRLA RHDKNQFPDI ISSGDAEPYY TNSSQLPVAY TTDVFEALDH QESLQRKYTG GTVFHIFLGE SIKDWESCRD LVKAVANNYR IPYFSISPTF SICPVHGYLE GEHFECPYCK REKQAKLELK LAELEKEKAE VLSVSSKI
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