| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1287 |
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| Symbol | mfd |
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| ID | 2741041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | + |
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| Start bp | 1322878 |
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| End bp | 1326345 |
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| Gene Length | 3468 bp |
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| Protein Length | 1155 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637160165 |
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| Product | transcription-repair coupling factor |
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| Protein accession | NP_971894 |
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| Protein GI | 42526796 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0502901 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTCAGC CTCTAATAGA TTCCTTACAA AGTTCTATCC GCTCATGGAA GGACATGAAA
AATGCCTTCG ATGAGATAGA TGAAAATTCT TATCCCTACA ACATTACAGG AATTTCCGGA
GGCCTTTTCG GATTTTTTTT AACGGAATAT TTATACAAAA CCCGTAAGCC TGTCCTCGTG
GTTGTTCCGA CTGAAAAGGA AGCGGAAGCC GTAAGAGCCG ACTTGGATTT TTCCGGAATA
GAAAATTTTG TATTGCCTTG GTGGGGCTCT CTTGCCTATA GGCCTATTTC GCCGACAGCC
CCCGTTTTTT CCGAACGAGC CGAAGTGCTG ATCCGCCTGC TTGAGTCCGG GAATGAATCC
TATACAAAAA ACAAACCTCC GGTTTTTATT ACCTGCCAGC GTTCCTTTTT AACTCCGGTT
CCTCCGGCAG ATTATTTAAA ACAAAACAAG GTAGAAATTG CTGCAGGTTC AAGCCTTGAT
ATTTTAAGCC TTGCAGAGCT TTTAAGTCTT TGGGGTTATA TAAGAGTTCC GCGTGTAAGC
GTGAGAGGCG AGTTTGCTCT GAGGGGAGAG GTCTTGGATA TCTGCCTTGC TTCCAATTCG
GGTTCTGAAA AAACGGCTTA TCGAATTCAA TTTGATTTTG ATAAGGTAGA AAAAATAAAG
AGCTTTGATA TAGCAAGCCA AGGTTCTTTA GAGGAATATA AAAAAATTAA CTTCTATCCC
GTAAAGGAAG TAATTTGGAA TGATGAGCGT ATTGACTGCT TGGAAAAAAA TTTAAAAACC
TATTCGGAAT TTTCTGAAAA TATTTTAAAA ATTATTGATG CCTTAAAAGA ATATAAAACC
TTTGAAGGAG AAGAAATTTT TTATCCTCTT GCGTTTCAAA AATCTTCTTC CGTTTTGGAA
TATGCGGAAT TAAATGATAT TCCTGTTTTT TATTCGGACT ATGACAGACA AAAAAATTCT
TCGGAAATTT TACTTAGAGA ATATATGGGG CTTTATAAAA AAACAAAAAC TCAATTTGAC
GAAAACGAAA AACGAAAAGC TCTTATTTCG GAATATCCCG AACCTCAACG CATCTTACTT
CAATTTGAAA GCAATGTACA AAAATATAAT AAGTCGATTT ATTTTAGAAC CTTAGCCGAG
CAAGAAGATA AAAATAAAAC TCTTAAATTT AAAACCGATC CGCCCCGCAG TTTTTTCGGG
AATATAGTTT ATTTACGCGA AGAATTAAAT AATCTTTTAA ATGATGATTG GTCTATCTTC
GTATTTGCCG AAAGCGATAA TCAGGCTCTC CGTATCGAAG AGATTCTGCA CGAAGACAGA
ATAAAAATTT TACCTTATAA CCTTTCAGGC GGCTTCGGTA TTCCTGATCT AAAAATTTTG
GTAATCCATG AAAACGAAAT TTTCGGTCGC CGCCGAAGAA TTCCAAAATC TGTAAAGACC
GCAAAGAGTT CGGTTATCGA TACCTTCATC GAATTAAATC CGGGAGACTA TGTTGTTCAT
GTAAATTACG GCATAGGAAA ATTCCGCGGT ATCGAACGCG TTAAAATTTT GGATACGGAA
AGGGATTATA TAAATCTTTT ATATGCAAAT GATGAAACCG TTTTTATTCC GATTGAGCAG
GCCGACCTTG TTCAGCGTTA TATAGGAAAC GAAGGAGAGG CTCCTCATCT CGATATCCTC
GGCTCCAAAT CTTGGGAGAA CAGAAAGAAC AAGGTAAAAA AATCGGTTGA AGATATAGCC
GCAAAACTTA TAGACCTTTA TTCTAAAAGA AAGGCAAGTA CGGGCTTTGC TTTTCAAAAA
GATGATGAAT GGCAGACAGC TTTTGAAGCG GCTTTTCCTT ATGAAGAAAC CGATGACCAG
CTTACCTGTA TCGCCGAGGT AAAGGAAGAT ATGGAAAAGC CTGTTCCCAT GGATAGGCTT
ATCTGCGGAG ATGTAGGTTA CGGTAAAACC GAAGTTGCAA TGCGGGCTGC CTTTAAGGCC
GTTATGAGCG GTAAGCAGGT TGCCTTTTTG TCGCCTACAA CTATTTTGAC CGAGCAGCAT
TTTGAAACCT TGGACAAGAG GTTTAAAAAC TTCCCCGTAA AATTAGCCCG TCTTTCCCGC
TTTGTTCCAA AGGGTGAACA AAAAAAAGTT TTGGAAAAAT TAAAAAAAGG CGAAGTGGAT
ATTTTAATCG GAACTCATCG CATAATTCAA AAAGATGTTG TCTTTAAGGA TTTGGGTTTG
ATGATTGTCG ATGAAGAACA ACGCTTCGGT GTTAAGGATA AGGAAAGATT AAAACAGATG
AAGCACAATG TGGACTGTCT TTCCCTTTCT GCAACTCCCA TTCCGCGAAC CCTTCACATG
TCGCTTTTAA AAATAAGGGA CATGAGCGTA ATTGCAACTC CTCCTCAAAA CAGAAAACCT
GTTGAAACGG TTATCGCCGA GTTCAATGCG GAAAAAGTTG CCGAAGTTAT AAGACGGGAA
TCGGAGAGAG GCGGGCAGGT TTTTTATCTT CATAACAGGG TTGAAAGTTT AGATGAAACT
CTTTTTATGC TTCAATCTCT TTTGCCTGAG ATTATGATTG AAACGGCACA CGGCCAAATG
TCTCCTAACC AACTGGAAGA AATTTTTGAG CGCTTTAGTT TGGGCGGTTT TCAGGTTTTA
ATTGCAACCA CCATTATCGA AAACGGCATT GACATTCCGA ATGCCAATAC CATCATCATA
GACCGAGCCG ACATGTACGG CGTTTCCCAG CTTTATCAGT TGAGGGGAAG GGTAGGCCGC
TCTGACAAAA AGGCCTATGC CTATCTATTG TATCCTGACG ATAAGGCTCT TTCCGAAATT
GCTATGAAGA GGCTTCAAGT TATTTCAGAC TTTACCGAGC TCGGTTCAGG TTTTAAGATT
GCGATGAAGG ATATGGAAAT AAGAGGAGCC GGAAATCTTT TGGGCAGGGA ACAATCTGGA
GATATTTATT CCGTAGGCTT TGATTTATAT TTGCGTCTTT TGGACGAGGC TGTTCAAAAA
CTGAAAAACC AAGATTATGA GCCTGTTCAA GAATCCGTTA TCGAGCTTGA GTATTCGGGT
TTTATTCCCG ATTCCTATAT TTCAAGCCCC GAAACCAAAA TGGAAGTTTA TAAAAAAATT
GCAGCCGTTA AGGTGCAGGG AGACCTCGAC AGGGTTTACT CCGAAATCCT TGACCGCTTC
GGTCCTGCAC CTTCCGAGGT GGAAAGTCTT TTGGCTCTTT CCGAAATAAA AATTATCTGT
AATCATCTTT CGATTGCAAG CCTAAAAGAA AGAAAGGCTG CCGTCCGCAT AGAGTTTGCC
CGTGTATCAA AAATCTCGGT GGATAAACTT TTGCGTATGA TAAAAGAATC CGCAGGCCGT
GTAAGCCTTG ACCCAAAAGC TCCGAATGTC CTCATCCTCC AAACCGGCAA AATCGGCTTA
AAAGAAAAAA GCGAATTCAT CCGCGAAAAG CTCGGCAGCT TGATGTAG
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| Protein sequence | MPQPLIDSLQ SSIRSWKDMK NAFDEIDENS YPYNITGISG GLFGFFLTEY LYKTRKPVLV
VVPTEKEAEA VRADLDFSGI ENFVLPWWGS LAYRPISPTA PVFSERAEVL IRLLESGNES
YTKNKPPVFI TCQRSFLTPV PPADYLKQNK VEIAAGSSLD ILSLAELLSL WGYIRVPRVS
VRGEFALRGE VLDICLASNS GSEKTAYRIQ FDFDKVEKIK SFDIASQGSL EEYKKINFYP
VKEVIWNDER IDCLEKNLKT YSEFSENILK IIDALKEYKT FEGEEIFYPL AFQKSSSVLE
YAELNDIPVF YSDYDRQKNS SEILLREYMG LYKKTKTQFD ENEKRKALIS EYPEPQRILL
QFESNVQKYN KSIYFRTLAE QEDKNKTLKF KTDPPRSFFG NIVYLREELN NLLNDDWSIF
VFAESDNQAL RIEEILHEDR IKILPYNLSG GFGIPDLKIL VIHENEIFGR RRRIPKSVKT
AKSSVIDTFI ELNPGDYVVH VNYGIGKFRG IERVKILDTE RDYINLLYAN DETVFIPIEQ
ADLVQRYIGN EGEAPHLDIL GSKSWENRKN KVKKSVEDIA AKLIDLYSKR KASTGFAFQK
DDEWQTAFEA AFPYEETDDQ LTCIAEVKED MEKPVPMDRL ICGDVGYGKT EVAMRAAFKA
VMSGKQVAFL SPTTILTEQH FETLDKRFKN FPVKLARLSR FVPKGEQKKV LEKLKKGEVD
ILIGTHRIIQ KDVVFKDLGL MIVDEEQRFG VKDKERLKQM KHNVDCLSLS ATPIPRTLHM
SLLKIRDMSV IATPPQNRKP VETVIAEFNA EKVAEVIRRE SERGGQVFYL HNRVESLDET
LFMLQSLLPE IMIETAHGQM SPNQLEEIFE RFSLGGFQVL IATTIIENGI DIPNANTIII
DRADMYGVSQ LYQLRGRVGR SDKKAYAYLL YPDDKALSEI AMKRLQVISD FTELGSGFKI
AMKDMEIRGA GNLLGREQSG DIYSVGFDLY LRLLDEAVQK LKNQDYEPVQ ESVIELEYSG
FIPDSYISSP ETKMEVYKKI AAVKVQGDLD RVYSEILDRF GPAPSEVESL LALSEIKIIC
NHLSIASLKE RKAAVRIEFA RVSKISVDKL LRMIKESAGR VSLDPKAPNV LILQTGKIGL
KEKSEFIREK LGSLM
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