Gene TDE1272 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1272 
Symbol 
ID2740565 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp1306080 
End bp1307066 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content38% 
IMG OID637160150 
Productoligopeptide/dipeptide ABC transporter, ATP-binding protein 
Protein accessionNP_971879 
Protein GI42526781 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.76985 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAAAAC TTTTATCCGT AAAAGAATTA ACTGTAAGAT TTGCCGGAAA AGAAGGATAC 
ACTACAATTG TTGATAGAGT CTCGTTTGAT GTTCAAAATG GAGAGATTCT TTGTGTTGTT 
GGGGAATCCG GATGTGGTAA AAGCACTATT GCAATGTCAA TCTTACAATT ATTATCAATC 
AACGGGGAAA TCTCCGGAGG ACATATTATC ATGGATGGGC AAGAACTCAC AAATCTTACC 
GAAGATGAAA TGTGCGAAAT TCGAGGGAAT AATATTTCCA TGATTTTTCA AGATCCTATG 
TCCTCCTTAA ACCCAACTAA AACAGTTGCA TCACAGCTAA TTGAGCCATA TATTATACAT 
AAGGGGATGA AAAGAAAGGC AGCCAGAGCT GAAGCTCTTA ACATATTAAA AGATGTGGGG 
ATTCCAAATC CGGAAAAAAG ATTAGATGAA TATCCGCATC AATTGTCCGG AGGTATGCGC 
CAGAGGGTAA TGATTGCCAT GGCCTTAGCC TGTCAGCCAA AACTTTTGAT TGCAGATGAA 
CCAACTACAG CCTTAGATGT TACTATACAA GCTCAAATAC TTGATTTGAT GAGGACATTA 
AGGAAAGAAA GAGGAACTGC CATTGTTTTT ATTACACATG ACCTTGGTGT TGTAGCAGAA 
ATGGCCGATA AGGTGCTTGT GTTGTATGCA GGCCATGCGG TTGAGTATAA TACTGTAGAA 
AAAGTTTTTA ACTCCCCAAA ACATCCCTAT ACCATGGGAT TGCTAAAATC AGTACCTCCC 
GTAGACAAGC ATATTGATTT TTTACCTTCA ATTGAAGGAA TTGTACCTAC TCCGGGGAAT 
ATGCCTAAGG GTTGCAGATT TTATCCGAGA TGTAAAAATA GAATGGACAT CTGTAAAAAC 
AGCGAGCCGA AAGAATATAA TCTTGAAGAT GGTTGGGTAA AATGTTTTTT ATACAGTAAT 
TTAAAAGAGG ATAAAAATGA GCTCTGA
 
Protein sequence
MPKLLSVKEL TVRFAGKEGY TTIVDRVSFD VQNGEILCVV GESGCGKSTI AMSILQLLSI 
NGEISGGHII MDGQELTNLT EDEMCEIRGN NISMIFQDPM SSLNPTKTVA SQLIEPYIIH 
KGMKRKAARA EALNILKDVG IPNPEKRLDE YPHQLSGGMR QRVMIAMALA CQPKLLIADE 
PTTALDVTIQ AQILDLMRTL RKERGTAIVF ITHDLGVVAE MADKVLVLYA GHAVEYNTVE 
KVFNSPKHPY TMGLLKSVPP VDKHIDFLPS IEGIVPTPGN MPKGCRFYPR CKNRMDICKN 
SEPKEYNLED GWVKCFLYSN LKEDKNEL