Gene TDE1260 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1260 
Symbol 
ID2741436 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand
Start bp1294168 
End bp1295736 
Gene Length1569 bp 
Protein Length522 aa 
Translation table11 
GC content38% 
IMG OID637160138 
Productcholinephosphate cytidylyltransferase/choline kinase 
Protein accessionNP_971867 
Protein GI42526769 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0510] Predicted choline kinase involved in LPS biosynthesis
[COG4750] CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00193493 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGATAATG CAATTATTAT GGCTGCCGGT TTCGGTTCGC GTTTTGTTCC CTTAACCTAT 
GCGACACCTA AGGGCTTGTT GGAAGTTTTT GGGGAAAGGA TGATTGAAAG GCAAATTGAA
CAGCTGAAAG CTGCCGGTAT CGACGACATA ACGATAGTTG TCGGCTATTT AAAGGAAACC
TTTGAATATC TTATAGATAA GTACGGCGTA AAGTTTGTAT ATAACCCCGA TTTTAAGAAT
AAAAACAATC TTTCCACCCT TTACCATGTA AGGGATGAAC TTAAAAGCAC CTATATTCTT
TCGAGCGATA ATTGGCTTAG GGAAAACATG TATCATTCCC ATGAGTATGA TTCATGGTAT
TCTTCCGTTA AGGTAGCCGG AAAAACGAAG GAGTGGATAT TAAAATTAGG CCTGCACGAT
AAAATTATGG ATGTAAAAGT CGGAGGACGA AACGGCTGGG TTATGTACGG CCCCGTATAT
TTTTCAAAAG AATTTTCCGA TAAGATACGC CCTTTGATTG AAGAAGCCTA TGAAAGAGAT
GATACCGATG ATTGGTACTG GGAAGATGTC TATATGAGGA ACATAAAAGA ATTAACTATG
TTTGCAAACA AGCAGGGTGA TCACCAAGTA TATGAATTCG AATCCCTTGA CGAAATTCGC
CTCTTTGACT CTTCCTATCT TATTTCCTCC CATGATAAAT GGCTTGAGCT TATATCGGAT
GTATTTAAAC GTCCTGAGCA CAGCATCACA AATCTAAAAC CTTTAAAATT CGGAATGACA
AACAAATCGT TTTTGTTTGA ATTTGAAGGT GAAGAATATA TTTTTAGAAT ACCGGGAGAG
GGAACCGAGG CCCTTATAAA CAGAAAGGAA GAATATGAGG TCTACAAGGC TATTTCTCCT
TTAAACTTAA GCGATTCCAT TATTTATTTT GATCCTGAAA AGGGGGTAAA AATTACCAAG
TTTATTCCCA ACTCCCATAC TGCGGATGCC CGTAATCCTG AAGACTTAAA AAAATGTATG
AAGGTAGCCC GCCGTCTGCA TGAGTCCGGC TTAAAGGTTG CGCATTCTTT TGATCTACGT
GAACGGATAA ATTATTACGA AAAAATTGCA AACGAAAAAA ACGGTATCTT CTATCATGAC
TACCACGAGG TTAGACTTTT GATGAATGAG CTTTTGGAAT TAATTGAAAA TACGGAAAAG
CCTCATGTTT TATGTCATAT AGACCTTGTT CCCGACAATT TTATAATAAA CGGAAACGAT
GTCCATTTAA TTGACTGGGA ATATGCCGCT ATGTGCGATC CCCTCATAGA TATAGCTATG
TTTGCCATAT ATGCTCATTA TGATAATGAA GAGCTTGAGA ATTTGATGTC TTTTTATTTT
GAAAGGCCCG TAAAAGAAGA GGAAAGAATG CGTATCTATT GTTATGTTGC TCTTTCAGGC
TTTTTATGGG CTCTTTGGAC TTGCTATAAG GAGGCTTTGG GGGTAAGCTT TGGAGATTAC
GGCTTAAAGA TGTACCGATA TGCAAAGGAT TATTATAAAA AAATAAAAGA ACTAGGAGGT
AATCTATGA
 
Protein sequence
MDNAIIMAAG FGSRFVPLTY ATPKGLLEVF GERMIERQIE QLKAAGIDDI TIVVGYLKET 
FEYLIDKYGV KFVYNPDFKN KNNLSTLYHV RDELKSTYIL SSDNWLRENM YHSHEYDSWY
SSVKVAGKTK EWILKLGLHD KIMDVKVGGR NGWVMYGPVY FSKEFSDKIR PLIEEAYERD
DTDDWYWEDV YMRNIKELTM FANKQGDHQV YEFESLDEIR LFDSSYLISS HDKWLELISD
VFKRPEHSIT NLKPLKFGMT NKSFLFEFEG EEYIFRIPGE GTEALINRKE EYEVYKAISP
LNLSDSIIYF DPEKGVKITK FIPNSHTADA RNPEDLKKCM KVARRLHESG LKVAHSFDLR
ERINYYEKIA NEKNGIFYHD YHEVRLLMNE LLELIENTEK PHVLCHIDLV PDNFIINGND
VHLIDWEYAA MCDPLIDIAM FAIYAHYDNE ELENLMSFYF ERPVKEEERM RIYCYVALSG
FLWALWTCYK EALGVSFGDY GLKMYRYAKD YYKKIKELGG NL