Gene TDE1222 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1222 
Symbol 
ID2740116 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand- 
Start bp1256131 
End bp1256799 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content30% 
IMG OID637160100 
Productiron-dependent transcriptional regulator 
Protein accessionNP_971829 
Protein GI42526731 
COG category[K] Transcription 
COG ID[COG1321] Mn-dependent transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAAATCT CGCAAATTAC AACCGAAAAT TATTTAAAAG CTATCGTCAA ATTTTTGTCG 
GAAAGTGATA AAGAAAAAAT TACCACCGGT GAACTTGCAA AACTATTACA TGTTACTCCC 
GGTACGGCAA CATCAATGGC AAAGAAACTT GAAAAAGAAA AATACATAGA ATATCAAAAC 
CGGATAGGAT GCAGGCTAAC CGAAAAAGGT AAAAAGTACG GTCTTAATAT TTTAAGGAGG 
CATAGATTAA TTGAAACCTT TTTATTTCAG ACACTTAAAA TGGACGGAAA AAACATTCAT 
AATGAGGCAG AGAATTTAGA ACATGCAGCC TCGGATCTTT TAATAGATAA AATAGACAAA 
TATTTAGGAC ATCCTAAAAG GGATCCCCAT GGAGCAATGA TACCCAGAAA AAATCAAAAG 
GAATATACAT GTACAGATTC AAGTTTAGAT AAAGTAAAAT GCGGAATAGA ATATTCGATA 
TCAAGACTTA CAGGAACGGA TGCTCAATTT GAATATTATA AAACAATAAA TTTAAAATTA 
AATTCAAAAA TCATACTTCA AAATAAAAAT GAAGAAAGCG GTTTAGCCGA GATAATAATA 
GATGGGAATA AAATATCTTG TTCCACGATG ATTTTAAAAA ATATATTTGT CGAAAAAATT 
ATTATTTAG
 
Protein sequence
MKISQITTEN YLKAIVKFLS ESDKEKITTG ELAKLLHVTP GTATSMAKKL EKEKYIEYQN 
RIGCRLTEKG KKYGLNILRR HRLIETFLFQ TLKMDGKNIH NEAENLEHAA SDLLIDKIDK 
YLGHPKRDPH GAMIPRKNQK EYTCTDSSLD KVKCGIEYSI SRLTGTDAQF EYYKTINLKL 
NSKIILQNKN EESGLAEIII DGNKISCSTM ILKNIFVEKI II