| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1211 |
|---|
| Symbol | hslU |
|---|
| ID | 2740105 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 1244005 |
|---|
| End bp | 1245462 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637160089 |
|---|
| Product | ATP-dependent protease ATP-binding subunit HslU |
|---|
| Protein accession | NP_971818 |
|---|
| Protein GI | 42526720 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1220] ATP-dependent protease HslVU (ClpYQ), ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00390] ATP-dependent protease HslVU, ATPase subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACGAAG AATTAAAAGA TTTGACGCCT AAACAAACTG TTGCAGAACT GGATAAATAT
ATCATAGGAC AAAACAAGGC GAAAAGAGCC GTTGCTATTG CTCTTCGTAA CAGAATGCGC
CGTCTCAAAC TTCCCGAAGA AATCAGAGAC GAAATAGCTC CTAAAAATAT TTTGATGATA
GGGCCTACGG GTGTAGGTAA AACCGAAATT GCAAGACGGC TTGCAAAATT GTCGGGAGCT
CCTTTTTTAA AGGTAGAAGC TACAAAGTAT ACTGAAGTAG GTTATGTAGG CCGCGATGTC
GAATCTATGA TCAGGGATTT GATGGCTGTC GGCTACACAA TGGTTAAAAG CGAAATGCAG
GAAAAACTAA AAGAGCAAGC AGAAAAAAAT ACCGAAGAAT CTTTATTGGA TTTGCTTTTG
CCCGGTTCAA ATAAAAAGAA AACTGCCGCA ACTTCTGCTC AGCCGCAAGA TGTTTCTCAA
GCCTCTAGCG GAACAACGAT AAGCCTTCCA AGTGTGAGTT CTACGGCTCA GGCGGAAGAG
CATAAGGCTC AAAATGAAAA CGATATGAGC GGCACAAGGG AAAAGTTCCG CGTAATGCTC
CGCGAAAATA AACTTGAAGA TAAGATGGTT GAGGTTACTA TTTCTCCTTC CATGGGAACT
CCCACATTCG AATTTTTTGC AGGCGGTTCA AACATGGAAG ATATTGAATC TGCAATGTCG
AATATTTCCA GTATGCTTAT GGGCGGAGCA AAATCAAAAC GCAAAAATGT AAGCGTAAAA
GAAGCCCGCG AAATTATAAT GGCCGAACAG CTTGATCGTA TGGTAGATCA TGATAAGGTA
ACGGATGAGG CAAAGCAAAG GGTCGAGCAG ATGGGAATTA TATTTATTGA CGAAATCGAT
AAGGTCGCTT CCCGTTCGGA TCGCGGCGGC GGGCCCGATG TTTCAAGAGA GGGTGTTCAG
CGCGATATTC TTCCCATAGT TGAAGGCTCT AAGGTTTCCA CTAAATACGG CGTTGTCGAT
ACCCGTCACA TTCTTTTTAT AGCAGCGGGA GCTTTTAGCG TATCAAAGCC GAGCGATTTA
ATCCCTGAAT TTCAAGGACG CTTCCCCTTG CGGGTAGAGC TTGAAGCCTT GCATGCAGAA
GATTTTAAAC GCATTCTCCT TGAACCTAAA AATGCTTTGA CCAAACAGTA TGCAGAGCTT
TTGGAAACCG AAGGCGTAAA AATTGAATTT TTAGATGAAG CCATTGATAG AATGAGTTTT
TTGGCTGCCG ATGTAAACAG CAAAAACGAA AACATTGGGG CAAGAAGGCT CCATACGATT
ATGGAAATGC TTTTAGAAGA TATTTCGTTT AATGCAAGCG AAATGGGAGG CGAAACGGTA
AAAATCGATG TAGCTTATGT GGATGAAAGG TTAAAAGATA TAGTACAGGA TCAGGATTTA
TCCCGATATA TTCTATAA
|
|---|
| Protein sequence | MNEELKDLTP KQTVAELDKY IIGQNKAKRA VAIALRNRMR RLKLPEEIRD EIAPKNILMI
GPTGVGKTEI ARRLAKLSGA PFLKVEATKY TEVGYVGRDV ESMIRDLMAV GYTMVKSEMQ
EKLKEQAEKN TEESLLDLLL PGSNKKKTAA TSAQPQDVSQ ASSGTTISLP SVSSTAQAEE
HKAQNENDMS GTREKFRVML RENKLEDKMV EVTISPSMGT PTFEFFAGGS NMEDIESAMS
NISSMLMGGA KSKRKNVSVK EAREIIMAEQ LDRMVDHDKV TDEAKQRVEQ MGIIFIDEID
KVASRSDRGG GPDVSREGVQ RDILPIVEGS KVSTKYGVVD TRHILFIAAG AFSVSKPSDL
IPEFQGRFPL RVELEALHAE DFKRILLEPK NALTKQYAEL LETEGVKIEF LDEAIDRMSF
LAADVNSKNE NIGARRLHTI MEMLLEDISF NASEMGGETV KIDVAYVDER LKDIVQDQDL
SRYIL
|
|---|
| |