| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1141 |
|---|
| Symbol | |
|---|
| ID | 2740000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | - |
|---|
| Start bp | 1169950 |
|---|
| End bp | 1171533 |
|---|
| Gene Length | 1584 bp |
|---|
| Protein Length | 527 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637160015 |
|---|
| Product | tail fiber domain-containing protein |
|---|
| Protein accession | NP_971749 |
|---|
| Protein GI | 42526651 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTAA GATCAAACGA TAAAAGCTCT GAAGCTTTGA CCGTAGGAAG TTTAAAAGTT
TTAGGCAAGT TAGAAAACGG AGCATTAAAT TCTATTCATA CTCATTTAAA AAGCTCGGAT
GCACAACAAT CAAAGATTAT TGCAGATATT GAAAAGCTGT ACGAGAATAT ATCGGCGGAC
GGAGTTATTA CGGCAAATGA AAAGCAAATT TTAAAAAAAG AAGTCGGTAT TATTGAAACG
GAATATCCTA TTATTTTACA AAAAGCTCAA AATGCGAAAA AAGGCGAATC AGAGATAAAT
GCTTTCAAAG TAGCTTTTAA AGCCTTAAGG GATTATCTTT TTATAGACTT AAAAATCTTT
GATGAGATGT CGGAAGCCTT AGACGTTGAT AGAGAAGTTT TTAATAAAAA ATTTGCAGAT
TATTATAAGT CCCGGGCAGT CTTGCAAGTT GCAAGTGATG CCGAAAATTA CTTATCATTC
CCCACCGATA CCGACATTTT AAGTCTTCTG AACTTTGATG AAACACCCCA AGCTCTGCCC
GCTCCAACCC CTTCATTTAC AGCTTGGCAA TCTAAAATCA TAGAGCTTGA TTGTACAAAT
AAAACAGAAA TCAAAATGAC TTTTGAAGAA GCTTTAAATA ACGTTATAAT TTTATCTGGA
GAATTAAAAA ACGATTTTAC ATTAAAACTT TTCTTTGATA AGCAAAACGG TAACGGAGCT
AAGCAGTATT TAATAGTTTA TAAATTAACA GGGATTTTTA ATGTTACAAT TCAAACTGAA
GAACCTGCAA CTAATAAAGT CTCTCAAAAT ATAAACGCCA AAACATTCGG GCTTGGCTGC
TATGCGGTGG TAGATTTTAG AGGCCACGTG TGGGCCTTTG AAGGCAATAT TAAGCAATCC
TTAATTGATG AAATTTTGCA GCATACGGAA AATAAACTTA GCAATAATGC ACAACAAACA
ATTACCAATT TTAAGAATGA AATAAATAAT TTTTATCTTG AAGAAAAAAA TAAAATGCTT
AATTTTATTC AAGAAAAAAC TAACGAGTTG GAGAATGCTC ACAGAGACCG GTTTATTAAA
GAGTCGGGAG CAATCGGCGA GGTAAGATAC TTTACAAACA AAAAATATAC CTACGGCTAT
TTATATGCAA ACGGCTATTC GTTTATTCCG GAACTTTACC CCGAGTTTTA TCAATTTTGG
CTTGAGAACT TTGGGGATAG AAACAAGAAA AACTATCTAG GCTATGACTC TTTCGGCTAT
CCGAAACTGC CTGACTTGCG AGGCGTTGCA TTAAGAGCAG TCGATGACGG AAGCGATCGA
GGCGGTGCAG CACTAGCACT GGAGTTTCAG GGAGACGCCA TTCGAAACCT TAAGGGACGA
GTTGGAGTGC AAGGGAATGA CGGCTATCCC AATCTTACTG CCGGAGTATT TCACACCCTC
GATACGGGGT ATATTGACTC TGGAACTTCT CAAGCCAGCA GTTATTTACG GTTATTAGGA
TTTGACGCCT CTCGTGTAGT CCCTACAGCC GAAGACAATC GAGTTAAATC ATACGGGGTA
TACCCGTTTA TAAAAGTTAT ATAA
|
|---|
| Protein sequence | MNLRSNDKSS EALTVGSLKV LGKLENGALN SIHTHLKSSD AQQSKIIADI EKLYENISAD
GVITANEKQI LKKEVGIIET EYPIILQKAQ NAKKGESEIN AFKVAFKALR DYLFIDLKIF
DEMSEALDVD REVFNKKFAD YYKSRAVLQV ASDAENYLSF PTDTDILSLL NFDETPQALP
APTPSFTAWQ SKIIELDCTN KTEIKMTFEE ALNNVIILSG ELKNDFTLKL FFDKQNGNGA
KQYLIVYKLT GIFNVTIQTE EPATNKVSQN INAKTFGLGC YAVVDFRGHV WAFEGNIKQS
LIDEILQHTE NKLSNNAQQT ITNFKNEINN FYLEEKNKML NFIQEKTNEL ENAHRDRFIK
ESGAIGEVRY FTNKKYTYGY LYANGYSFIP ELYPEFYQFW LENFGDRNKK NYLGYDSFGY
PKLPDLRGVA LRAVDDGSDR GGAALALEFQ GDAIRNLKGR VGVQGNDGYP NLTAGVFHTL
DTGYIDSGTS QASSYLRLLG FDASRVVPTA EDNRVKSYGV YPFIKVI
|
|---|
| |