| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1123 |
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| Symbol | |
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| ID | 2739539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | - |
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| Start bp | 1153827 |
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| End bp | 1155512 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 637159997 |
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| Product | sigma factor regulatory protein, putative |
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| Protein accession | NP_971731 |
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| Protein GI | 42526633 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGAAA TTAACACTCT TGACGTTTAT GCATTGATTA CTCTTTCGAT CTTGAATATT
TTATTATTAT TATTTCTCAT AAGAATTACG GCTACAAACA AAAAGAAAGC CGGCGAGATA
TCAAGGCCCT TTGTTTTATT GACACATTCT ACCTTGGCCT TTGCATTTAT AATAAGCATA
AGTACTGCAG CCTCGGTATT TTTAAAAAAC TATATGATTT TAAATATAGG CTTATCGGTT
GTTCTAGTTG TTTTTACTGT CTATATAACC GTATCCGAAA AGATATATCT ACAAGATCAA
GTCGAAAAGC AAAAGAAAGA CAAGGCAAAT GCAGATTATA TTAAAAAATT ACAAAATCTC
CCCTCTGAAG AATCTTTACG AGCACGTAAA CTTATAAGCA CGGCCCGCCT TTTACTCCAA
AAAACAAACG GATTAATCTC AGGAAAGAAA GATATCTCAT CCGAAATGTT TCCATACATC
GCAGAATCAT TTTTAATGGA GTTATCGGCT GATGGGGCTG TAGTCCTTGC AGTACAAAGT
TTTGAAGAGG TCTTGGCTGT AAAGGCCTTA ATCGGCACCT TTCCTCCGCC GTATAAATTA
CCCGATGACC TTGCACGCAA AGAAGATCAC GTATTTTCCA ATTTTAAATA TGCACGGTTT
GAGATGGGTG AATCGATATT TACGGAAGTT GCATCCCAAG GCAAAACTCT ATTCATTAAA
GATTGTAAAG GCAACCCCTT ACTTCCTAAC AATGGAAACG AAAAATTTTT ACAGCACGGA
AGCCTCATCT TCTTCCCTTT AATGGTTAGC ACTGTTTTAG TGGGCGTGGC GGCCGTATCC
CGTAATCCGG ATAATGTTCC TTTTTCGGAA AATGAAGTCA AGATAGGAGA ATACTTATCG
GATTTTGCGG CAGAAATGAT CAACCTTACT TTAAATATAT CCGAGGCTTC CGAACATGCC
GAAATTGAAA ATATAACCGA TACGGTTGCA AAAATTCAAA GGATTCTTTT ACCTAAAAAC
TTAAAAAAAG TCCCCGGCCT TGAAATCGGA GAATATTTTT TACAGGAGAG AGGTATCTGC
AGTGACTATT ATGACGTCAT CGTTCAACAA AAAAGAGTCT TTATCGTCCT TGCGGATGTT
GCAGGTAAAA GTATTCAATC TGCAATTATT ATGATTATGA TTAGGGCCAT CCTCTACCTT
ATAACAAACA CGGATCAAAA CACGGAATCT ATTTTGGACT GGCTCAATAA GGGTATTACC
GGCAAGATAG ATATAGACCA CTTTGCAAGT ATTTCTCTTT TATCCTATGA ACAGAAAACA
AATACAATAG AATTCATAGG GGCAGGTAAT CAGGCAATGA TGATATGGAA CAATGAAAAA
AATAAAATCG AATTATTCCA GCAAAAAACG GACCCTATAG GAATAGATGT CCGTTCAACA
TATAAAAGTA TAAAAATTCC TTTGCATGAG GGTGATGTAG CAGCTTTATA CACGGACGGT
ATTATCGAAA CACTTAATAA AGCAGGAGAG CAGTACGGAG CTGCCAGACT TGCAAAACTT
ATAGCCGATA ATCATTCCAA AAATTCAAAG GATATAGTAA ATAAAATAAA AAATGACATG
ACTTCGTTTA TAGGAACGGC CCAGACTCAT GATGATCGCA CTTTGCTGAT TATTAAGGCT
AGGTAA
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| Protein sequence | MKEINTLDVY ALITLSILNI LLLLFLIRIT ATNKKKAGEI SRPFVLLTHS TLAFAFIISI
STAASVFLKN YMILNIGLSV VLVVFTVYIT VSEKIYLQDQ VEKQKKDKAN ADYIKKLQNL
PSEESLRARK LISTARLLLQ KTNGLISGKK DISSEMFPYI AESFLMELSA DGAVVLAVQS
FEEVLAVKAL IGTFPPPYKL PDDLARKEDH VFSNFKYARF EMGESIFTEV ASQGKTLFIK
DCKGNPLLPN NGNEKFLQHG SLIFFPLMVS TVLVGVAAVS RNPDNVPFSE NEVKIGEYLS
DFAAEMINLT LNISEASEHA EIENITDTVA KIQRILLPKN LKKVPGLEIG EYFLQERGIC
SDYYDVIVQQ KRVFIVLADV AGKSIQSAII MIMIRAILYL ITNTDQNTES ILDWLNKGIT
GKIDIDHFAS ISLLSYEQKT NTIEFIGAGN QAMMIWNNEK NKIELFQQKT DPIGIDVRST
YKSIKIPLHE GDVAALYTDG IIETLNKAGE QYGAARLAKL IADNHSKNSK DIVNKIKNDM
TSFIGTAQTH DDRTLLIIKA R
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