Gene TDE1109 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1109 
Symbol 
ID2740239 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand
Start bp1143220 
End bp1144389 
Gene Length1170 bp 
Protein Length389 aa 
Translation table11 
GC content42% 
IMG OID637159983 
Productpyridoxal-dependent family decarboxylase 
Protein accessionNP_971717 
Protein GI42526619 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0019] Diaminopimelate decarboxylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAAGAA AGGATTACAT TAGCGATTCT GAGTGGAAAC ACTTTATGAG TTTTTCAGAA 
AATCTGGAAA CGCCCTGTGT TGTTATCAAC CTAAAAACAA TCAAAAAAAA TTATCAAAAG
TTAAGAGAAA ATTTTCCCTA TGCGGATATT TTTTATGCGA TTAAGGCTAA TCCGCATGAA
GAAATTATTT CAATGCTAAA CGAGATGGGT TCATGCTTTG ACATAGCTTC ACGTTATGAA
CTTGACAAGG TTCTAAAATT AGGCGTAAGC CCTGAAAGAC TCAGCTACGG AAACACCATA
AAAAAGGCAA AGGATATTGC TTATTTTTAT GAAAAGGGTG TCAGAATGTT CGCTACGGAC
AGTAAGGACG ACCTTAAAAA TATAGCTCAA TTTGCTCCCG GTTCGAGAGT TTATGTGAGA
ATCCTTGTTG AAAACACTAC CAGTGCCGAC TGGCCTTTGT CAAGAAAATT CGGCTGCCAT
CCCGATATGG CCTATGACCT TTGCATTCAG GCCAGAGATT CGGGCCTTAT TCCTTACGGT
ATTTCTTTCC ACGTAGGAAG CCAGCAGCGG GACATCGGTC AGTGGAACGA TGCCATTGCA
AAGACAAAAT ACCTGATGGA CTCTTTGGAA GAAGAAGAAG AAATTAAGCT CGAAATGGTC
AACATGGGCG GAGGTTTCCC CGCTTCTTAT GTTACACCTG CAAACGACCT AAGCGAGTAT
GCTTCCGAAA TTAGCCGCTA CTTGGAAGAT GATTTCGGTG AAGAGCGTCC GCGCATTATT
TTGGAACCGG GCCGCTCCCT TGTAGGCGAC AGCGGTATCT TGGTAACCGA GGTTGTTATG
ATTTCGCGCA AAAACAACAC AGCCCTCTTT AGATGGGTAT ATCTTGATAC GGGTCTTTTT
AACGGTCTTA TTGAAACCCT AAACGAATCC TTAAAATACC CGATCATTAC CGATAAGGAT
GAAGGCTGCA AAAAATGGGG TGAGGTCGTT TTGGCCGGTC CTACATGCGA CAGTATGGAT
ATTATGTATG AAGATTATAA GTACAGTCTT CCTACCAACC TTAAGCCCGG AGACAGGGTA
TACTTCCTTA CAACCGGTGC TTATACATCC AGTTATGCTT CTGTAGAGTT TAACGGCTTC
CCGCCGATTA AAACCTACAT AATGAAGTAA
 
Protein sequence
MERKDYISDS EWKHFMSFSE NLETPCVVIN LKTIKKNYQK LRENFPYADI FYAIKANPHE 
EIISMLNEMG SCFDIASRYE LDKVLKLGVS PERLSYGNTI KKAKDIAYFY EKGVRMFATD
SKDDLKNIAQ FAPGSRVYVR ILVENTTSAD WPLSRKFGCH PDMAYDLCIQ ARDSGLIPYG
ISFHVGSQQR DIGQWNDAIA KTKYLMDSLE EEEEIKLEMV NMGGGFPASY VTPANDLSEY
ASEISRYLED DFGEERPRII LEPGRSLVGD SGILVTEVVM ISRKNNTALF RWVYLDTGLF
NGLIETLNES LKYPIITDKD EGCKKWGEVV LAGPTCDSMD IMYEDYKYSL PTNLKPGDRV
YFLTTGAYTS SYASVEFNGF PPIKTYIMK