| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1107 |
|---|
| Symbol | nusA |
|---|
| ID | 2740237 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | - |
|---|
| Start bp | 1140980 |
|---|
| End bp | 1142467 |
|---|
| Gene Length | 1488 bp |
|---|
| Protein Length | 495 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637159981 |
|---|
| Product | transcription elongation factor NusA |
|---|
| Protein accession | NP_971715 |
|---|
| Protein GI | 42526617 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0195] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01953] transcription termination factor NusA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGAAG GAATAATTGA GGCAATTCGG GAATTTGCAC AGGAAAAAGG AATTGATGAC
GATTTTGTTT TGCACATTGT AGAGCAGGCT CTAAAAGCAT CTTATAAAAA ACAATTCGGA
ACAGATGCAA ATGCCGTATT CAATGAAGAA ACAGGAAAAA TATACTCAAA GAAAATAATA
ACGGAAGATG CAAAAAATCC GGTTTTTGAT ATAAGTTTAG AAGAAGCAAA AAAATTGGCC
CCCTCTTGCG AGGCAGGTGA TGAACTTTTA GTCGAAGTCG ATCCGAAAAG CTTAGGTATT
AATTCTGTCA AGGTCGGAAT GCAAAGAGCA ATCCAATGTA TCAGAGAAAT GCAAAAAGAT
ACCCTTTATG CAGAATACAG TACAAAGGTA GGAGAAATCA TAATCGGTTA CTACCATCGG
GAACGAAACG GAAACATCTA TGTCGACTTA GGAAAGGTTG AGGGCTTATT ACCTAAAAAA
TATCAGTGTC CGGGAGATCA CTTTGGAAGG AATGCAGCAG CCGGAGAAGA ATCAAGAATA
AAAGCCCTTG TACGGGAAGT AAAAAAACAC CGTCAATCAA ACGTAGTACA GCTGATCCTT
TCAAGAACCG ATGCGGAATT TGTAAGGCAG ATACTGGAAG TGGAAGTGCC CGAAATTGAA
AGCGGAATAG TAAAGATTCA TAATATTGTA CGTGAACCAG GTTATAGAAC AAAGATAGCG
GTTTCAACTG ACAGAGATGA TATAGATCCT GTAGGAGCCT GTGTAGGAGC AAAGGGAGCA
AGAATTCAAG CAGTTATCGC AGAGTTGGAT GATGAAAAGA TAGATATTCT ACCCTACTCT
GAAGACCCTA AGGCCTATAT AAAAAGCGCC CTTTCACCTG CAGAAGTCAT GGATGTTATG
ATATTGGATG CGGAAAAAAG AAAGGCCCTT GCAATCGTTT CCGACTCCCA ATTATCGCTG
GCTATAGGAA AACACGGTTT AAACGTACGC CTTGCAAACC GCCTTGTAGA CTGGAACATA
GATGTAAAAA CCGAAGAACA GTTTAAACAA ATGGATATTT ACACGGATGC CAGAAAGGCT
GTCGAAAACT TATTCACTGA TGAAACAAGT GATGAAGATG AAGAATATGA GGAAATTTCC
AATGTTGCCG AACTTCCGGG AATTACCGAA GATATTCTTA CAGTATTACG TAATAACGAA
ATTGAAGATA TACAAGACTT GATTAACATG GAAGATGATG AAATCAGGGC ATTGGAAGGT
CTTACTACAG AGATGGCTGA TACCCTTCTT GACATTATAG CTAATGCCGT TGAAGTTGTA
GAAGACGATG GAGATGAAAG CGATGAAGAA AGCGAGCCTG TTTCGGATGA TGAGGGTGAA
GTTGAAGAAT TTGAATGCCC TGAATGCGGT CATAAAATAA CAACAGATAT GACAAAATGC
CCCAATTGCG GAGTAGATCT TGCTTTTGAA TATGAGGACG AAGAGTAG
|
|---|
| Protein sequence | MSEGIIEAIR EFAQEKGIDD DFVLHIVEQA LKASYKKQFG TDANAVFNEE TGKIYSKKII
TEDAKNPVFD ISLEEAKKLA PSCEAGDELL VEVDPKSLGI NSVKVGMQRA IQCIREMQKD
TLYAEYSTKV GEIIIGYYHR ERNGNIYVDL GKVEGLLPKK YQCPGDHFGR NAAAGEESRI
KALVREVKKH RQSNVVQLIL SRTDAEFVRQ ILEVEVPEIE SGIVKIHNIV REPGYRTKIA
VSTDRDDIDP VGACVGAKGA RIQAVIAELD DEKIDILPYS EDPKAYIKSA LSPAEVMDVM
ILDAEKRKAL AIVSDSQLSL AIGKHGLNVR LANRLVDWNI DVKTEEQFKQ MDIYTDARKA
VENLFTDETS DEDEEYEEIS NVAELPGITE DILTVLRNNE IEDIQDLINM EDDEIRALEG
LTTEMADTLL DIIANAVEVV EDDGDESDEE SEPVSDDEGE VEEFECPECG HKITTDMTKC
PNCGVDLAFE YEDEE
|
|---|
| |