Gene TDE1076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE1076 
Symbol 
ID2739088 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand+ 
Start bp1107076 
End bp1108116 
Gene Length1041 bp 
Protein Length346 aa 
Translation table11 
GC content45% 
IMG OID637159950 
Productoligopeptide/dipeptide ABC transporter, ATP-binding protein 
Protein accessionNP_971684 
Protein GI42526586 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGATA ACGAAAAAAA GATAGATCCT AATGACCATG TTCTTGAACT GATTAATATA 
AAAAAATATT TTGAGCCCCA TCAAGGTTTT GTCCAAAGCC TTTCAAAGGG AACAGCCAAA 
AAGATAAAGG CTGTAGATGA TGTTACCTTG CGTCTGAGGA GGGGAGAAAT CTTCGGCCTT 
ATAGGGGAAT CGGGTTCAGG TAAAACTACG ATAGGGAAGA TAGCGATGAA GCTTCATACC 
CCTACCGAGG GAACAATCCT ATACAATGGT GAGGATGTTA CAAACAGCGA TAAGGAAAAG 
ACTGCCTTTT ACCGCCGCCG TGTTCAGATG ATTTTCCAAG ACCCCTATGC TTCTATGAAT 
CCCCGTTTTA AAATTCGGGA TGTAATGGAG GAACCTCTTC TTATTCATAA GATTAAGGGA 
ACTCGGGCAG AAAACGATGA AAAAATCATC AAGGCTATTT CGGAGGTAAA GCTCAACCCG 
CCTGAGGAAT TTATGACACG CTATCCTCAC ATGCTTTCGG GCGGTCAAAG GCAGCGTATA 
GCTACGGCCA GAACCCTTAT CCTAAATCCT GAGGTTATAG TTGCAGATGA GCCTGTTTCG 
ATGATCGACC TTTCAACCCG TGCGGAAATT CTTCATATGA TGAGGGAGGT TCAAAGGAAG 
TTAGGCCTTA CCTATCTCTA TATTACCCAC GACCTTTCGA CGGCAAGGTA TTTTACCGAC 
AGAATAGCGG TTATGTATCT CGGCCGCATC GTAGAGATGG GGGATGCCGA TGATGTTATA 
GATAATCCCA TGCATCCTTA TACTCAGGCC TTGATCGAAG CTGTTCCCGA GCCTAAACCC 
GGAATGCTTG AAGTGATTAA AAAACTCCCC ATTTCGGGAG AAATTCCTTC TCCTGCAAAT 
GTGCCTTCAG GCTGCCGCTT CCATACGAGA TGTCCCTATG CCGATGAGTC CTGTTCGTCT 
ATGGAAGAAC CCTCGTTGAT GGACATAGGA AAGGGACACT TTCATGCCTG CCGAAAGGCC 
GAAGAGATTA AGAAGGGATA A
 
Protein sequence
MSDNEKKIDP NDHVLELINI KKYFEPHQGF VQSLSKGTAK KIKAVDDVTL RLRRGEIFGL 
IGESGSGKTT IGKIAMKLHT PTEGTILYNG EDVTNSDKEK TAFYRRRVQM IFQDPYASMN 
PRFKIRDVME EPLLIHKIKG TRAENDEKII KAISEVKLNP PEEFMTRYPH MLSGGQRQRI 
ATARTLILNP EVIVADEPVS MIDLSTRAEI LHMMREVQRK LGLTYLYITH DLSTARYFTD 
RIAVMYLGRI VEMGDADDVI DNPMHPYTQA LIEAVPEPKP GMLEVIKKLP ISGEIPSPAN 
VPSGCRFHTR CPYADESCSS MEEPSLMDIG KGHFHACRKA EEIKKG