| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1074 |
|---|
| Symbol | |
|---|
| ID | 2739086 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 1104695 |
|---|
| End bp | 1106089 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637159948 |
|---|
| Product | oligopeptide/dipeptide ABC transporter, permease protein |
|---|
| Protein accession | NP_971682 |
|---|
| Protein GI | 42526584 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAATT TTGTTGATAG ATTTAAAGAA TTTTGGAATG ATTTTAAAAA AGAAAAAATA
GGCATAGTTG CCATAGTTCT TTTAGGTTTA CTTGTAATTT TGATTATACT TGAGCCTGTT
GTCTTGCCCT TTAAGGGAAC AAACGATAAT TGGCATAACA TTTCTTATTG GGAAGATAAC
CCTGCTTCCG CTCCTCCCGT ATGGTCGGAA TTGTTCAGCA CAAAAAAATC GGCTAGGACA
GTTCGGTTTA CCGAGCCCGA AATTACGGAA GAAGAATCGG AGCATTTCGG TCAGGCTAAG
GTTTATAGTT TTAAATATAA CTATAATTAC GATAAAAACC CCAATAACAT TATTTTTAGA
GCCGAACTTA CCGGCGATGT AATAATGAGT ATGGATGTTA TCCGCCCTGA TGGAAAACGT
ATTGAGCTCG GAGTTTTTCA AAAAGGAAAT TTAAAAGATT ATCACAGCCG CTTTACGGTT
TTAACCGATG CAAAATCAAC AATGCAGCAA TTTACGGCTG CTTACGGCGC CTCAGCTACA
TCGGGAAACG CAAATCCTGT TCAGTTGTTG TTCTCTGAAG TTTCAAAGAC TATGTACAGG
GATAAAAAGC CTTTAAAGGG TGAATATGTT TTTAAATTCG TTATACCCAA AGATGTTGCA
TCCAACTCTG CCAATAAGAT TGAAAATCCG CGGCTTATAA TTCCGGGAGC GGTTTCGGGT
CTTTTGGGTA CCGACCTAAA CAAGAGAGAT TTATTTTCAG GTGTTATGGC CGGTTTAAAA
TGGGCTCTTT TAATAGGTCT TGTTGCAAGT ATTATTTCCG TTTTGGTCGG CGTTATGTAC
GGAATTATAA GTGCCTACTT CGGCGGAAGG GTTGATACGG TTATGATGTT TATCTTTGAA
ATAGTCGTAT CCGTTCCTAT TATTCCTATA TTGATTGTAT CGGCTGCAGT TTTTAAACCG
AGTATATGGA TGATAATCCT TGCTCTTATT ATTTTCGGCT GGACAGGCTC GGTAAAAACC
GTCCGCTCAA TGGCCTTACA AATAAAGGAA GAAACCTATA TTGAAGCCGC AAAGGCCCTC
GGTGCCGGAA AATGGAGAAT TATTCTAAAA CATATCGCTC CTCTTCTTTT GCCGTATTCT
TTTGCTATTA TGGCAAGTTC GGTTCCGGGA GCCATTATTT TTGAATCCTC TCTTTCGCTT
TTAGGTTTGG GAGATCCTTC TATTGTAACT TGGGGACAAA TTCTCCATGA TGCACAAAGC
TCAGGCGCAA CCTTAAACGG TTTATGGTGG TGGATTATTC CTCCCGGTCT TTTTATAGCC
CTTTTGGGTA TGATATTTGC ATTCCTAGGT TTTGCAATGG ATAAGATACT GCATCCTAAA
CTCAGGACAA GGTAA
|
|---|
| Protein sequence | MENFVDRFKE FWNDFKKEKI GIVAIVLLGL LVILIILEPV VLPFKGTNDN WHNISYWEDN
PASAPPVWSE LFSTKKSART VRFTEPEITE EESEHFGQAK VYSFKYNYNY DKNPNNIIFR
AELTGDVIMS MDVIRPDGKR IELGVFQKGN LKDYHSRFTV LTDAKSTMQQ FTAAYGASAT
SGNANPVQLL FSEVSKTMYR DKKPLKGEYV FKFVIPKDVA SNSANKIENP RLIIPGAVSG
LLGTDLNKRD LFSGVMAGLK WALLIGLVAS IISVLVGVMY GIISAYFGGR VDTVMMFIFE
IVVSVPIIPI LIVSAAVFKP SIWMIILALI IFGWTGSVKT VRSMALQIKE ETYIEAAKAL
GAGKWRIILK HIAPLLLPYS FAIMASSVPG AIIFESSLSL LGLGDPSIVT WGQILHDAQS
SGATLNGLWW WIIPPGLFIA LLGMIFAFLG FAMDKILHPK LRTR
|
|---|
| |