| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1061 |
|---|
| Symbol | |
|---|
| ID | 2740822 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 1086786 |
|---|
| End bp | 1088570 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637159934 |
|---|
| Product | ABC transporter ATP-binding protein/peptidase |
|---|
| Protein accession | NP_971669 |
|---|
| Protein GI | 42526571 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00531558 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAAA CATCTTTTAG GACATATAAG TCGGTGCCTG TTTTGATTTT GCTGGAAGCC
CTTTTATATA CGGGAGATAA TTTAATTTCG ATATTTTTTG CGCCTGCCGT TTTGAGCCTT
ATTCAAAACA ATGCTCCCAT TAAAAATCTT TTAATAACTA TTTTTGCCTT TGCTTTTTCT
TTAATGCTTT TACGCGGACT CCTCTCTTAT CTGCGAACGA ACCATTTATT CGGGCGGATT
GGAGTTAGGA GTGAGCTTAT TTTTATGATA GGCAGTAAGG CGATGAATAC TTCCTATAAT
AACTTGGATA ATAAGGATTT TGAAGCAAAG AAAAATAAGG CGATGGGTGT TACCGGCGGT
AACTCGGAAT CAACCGAAGC TATTTGGACT ACCTTACAGG GGCTTCTTCA ATACCTTCTT
TGCTTTATCA TCTATCTTGT TATCCTTGCT TCCTTAAACC TTAATATAAT TTTAATTACC
TTTTTGACAA CCTGCGTGAG TTTTTTTATC ACCAACAGTG TAAGCTCTTG GATGTATAAA
AGGCGTGATG AAGAAAATAA GCATGTAAAT CATTTACGCT ACATAACCCA AACCGGAAAA
AATAAGCAGC TTGCAAAGGA TATCCGCCTT TTCGGAATGG AGGCTTGGCT TAAAGAATTA
TATGAAAAGC ATTTAAGGCT TTACAGCAAT TTTCACCTCA AAGGAGAAAA GCGTTATTTT
TTTGCCGACC TTGCAGACCT TGTTTTAACC TTTTTGCGGA ACGGTCTTAT TTATTATTGG
CTGATAAGTC TTGTCTTACA AAAAAATATA AGCGTTCCCC AATTTATTCT TTATTTTGCC
GCAGCGGGAA CTTTTACCCA ATGGGTAAGC GGTATTTTAA ATCGGTTTTC TGTTTTGCAT
AAGCAAAGTC TGGATATTTC CCGCCTTAGA GAATTTTTTG AATTTAAAGA AGATTATCTA
TTTGAAAAAG GTGAAAAAAT TCCTCTACAA AAAGAAAACC TCATCGAGCT AAAAGATGTA
AGCCTTTTAT ATTCGGAAGG CGGAACTCCT GTTTTGGATA GATTCAATTT GACTTTGAAG
CCTAAAGAAA AGCTTGCCAT TGTCGGCTTA AACGGGGCAG GAAAAACAAG CCTTGTAAAA
TTGATTACCG GGCTTTACGA TCCTAGCCAA GGAGAGGTTT TATTTAACGG AAAAAATATA
AAAGAATTTA ACCGAAGCGA ATACTATAAG TGCTTTAGTG CGGTCTTTCA GGAGTTTTCG
ATTCTGCCTA CCAGTATTGC TGTAAACATT GCACAAAGCC GAGAGAACAT TAACAAGGAG
AGGATTGAAG ATGTGCTAAA GCTTTCGGGA CTTTACGATA AGGTTAAAAC TCTTCCCCAA
AAAGAAGAAA CCCGTCTTTG TAAGGACATC TTCTTTGATG CCGTAGAACT TTCAGGCGGC
GAAACTCAAA AGCTCTTACT TGCAAGGGCT CTTTACAATG ACAGGCCCTT TTTAATATTG
GATGAACCGA CGGCAGCCTT GGACCCTATC GCTGAACATG AGCTTTATAC TAAGTATAAC
GATTTATCGA AGGACAAAAC TTCTATCTTT ATTTCGCACA GGCTTGCTTC CACCCGCTTT
TGTGACAGGA TTATTTTTAT AAAGGACGGA AAAATAATCG AAGAAGGCAC CCATGATTCT
CTTTTAAAAA AGGGCGGGGA GTACGCTCAT CTTTTTGAAG TACAAAGCAA GTATTATAAG
GAAGAACAGG ATAAAGAATT GCCTGAAGGT TTAGGGGAAA TCTGA
|
|---|
| Protein sequence | MLKTSFRTYK SVPVLILLEA LLYTGDNLIS IFFAPAVLSL IQNNAPIKNL LITIFAFAFS
LMLLRGLLSY LRTNHLFGRI GVRSELIFMI GSKAMNTSYN NLDNKDFEAK KNKAMGVTGG
NSESTEAIWT TLQGLLQYLL CFIIYLVILA SLNLNIILIT FLTTCVSFFI TNSVSSWMYK
RRDEENKHVN HLRYITQTGK NKQLAKDIRL FGMEAWLKEL YEKHLRLYSN FHLKGEKRYF
FADLADLVLT FLRNGLIYYW LISLVLQKNI SVPQFILYFA AAGTFTQWVS GILNRFSVLH
KQSLDISRLR EFFEFKEDYL FEKGEKIPLQ KENLIELKDV SLLYSEGGTP VLDRFNLTLK
PKEKLAIVGL NGAGKTSLVK LITGLYDPSQ GEVLFNGKNI KEFNRSEYYK CFSAVFQEFS
ILPTSIAVNI AQSRENINKE RIEDVLKLSG LYDKVKTLPQ KEETRLCKDI FFDAVELSGG
ETQKLLLARA LYNDRPFLIL DEPTAALDPI AEHELYTKYN DLSKDKTSIF ISHRLASTRF
CDRIIFIKDG KIIEEGTHDS LLKKGGEYAH LFEVQSKYYK EEQDKELPEG LGEI
|
|---|
| |