| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1041 |
|---|
| Symbol | pnp |
|---|
| ID | 2741315 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 1068464 |
|---|
| End bp | 1070560 |
|---|
| Gene Length | 2097 bp |
|---|
| Protein Length | 698 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637159914 |
|---|
| Product | polynucleotide phosphorylase/polyadenylase |
|---|
| Protein accession | NP_971649 |
|---|
| Protein GI | 42526551 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
|---|
| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000243364 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAAAA GAGTAACTTA TAAAATCGGC GAACATGATT TAATTTTAGA AACCGGTTAT
TTGGCAAAAC AGGCCAATGG TTCTATTTAT GCGGAATATG CCGGTTCCGC AATTTTAGCT
ACAATCTGTG CCTCGGGACA GGCTCAGGAA GGTTTAGACT ATGTCCCCCT AACGGTTGAT
TATAACGAAA AATATTATGC AGCCGGAAAA ATCCCCGGAG GCTTTATAAA AAGAGAGGGT
AGACCAAAGG ATAAGGAAAT CCTTGTTTCC CGTCTTATAG ACAGGCCCAT GCGCCCCTTG
TTTAACAAAG AATTCGGACG TGAGATCCAG TTGGTTCCCA CCTGTATTTC AACGGATATG
ATAAACCCGC CCGACATCCT TGCAGTTATC GCAAGCTCTG CAGCTGTTCA TATTTCGGAT
ATACCCTTTG ACGGCCCCGT TGCAGCTGCC CGTGTCGCCT ATAAAAACGG AGAATACATT
ATAAACCCGA CATTTAGCCA AATTGAAACG GCCGATATGG AAATCGTAGT TGCCGGAACA
AAAGAGGGCA TTACCATGGT CGAAGGCGGT GCTAACGAGG TTTCCGAAGA GGTAATGCTC
ACAGCCTTGG AAAAAGCCCA TGAAATGATC AAGTCTCTTT GCAAGATGCA GGAAGATTTA
CGCGAACTTG CCGGAAAAGA AAAACTTCCC CTCGTTCCCC TTGAAGCCGA GCTCGAAAAT
AAGCAGGCAA TTTATGACGA AGCCTTCCCC CGTTTAAGCA AAACCCTCTA TCTTTCAACA
AAGATGGAAC GCCGAGAAGA ATCGGACAAG GTAAAAAAAG AATTGGCCGA AAAATATGCC
GAACAGCTTG AAGACGAAAT TCAGCTTAAA CTTTTTAACG CCCTCTTTGA AGAGATGGAG
TATAATATTT TAAGAACCAA TATCTTGGAC AAGGGCTTGC GGGTTGACGG AAGAGGCACT
AAGGACATTC GTCCCATAAC TTGCGAAATC GGAGTTCTTC CCCGTCCCCA CGGTTCGGCA
GTCTTTACAC GAGGCGAAAC CCAATCCTTG GGCGTTGTAA CGATAGGAAC AGTCTTTGAC
GAACAGATAT ATGATGACAT CGAGGGAGAC AGAAGAGAAA ACTTTATTCT TCACTATAAT
TTCCCGCCCT TCTCGGTAGG GGAGGTCGGA AGACTCGGAA CGGGCCGAAG AGAAATCGGG
CACGGAAACC TTGCACACCG CTCCCTTTAT CCGATGGTTC CCGAAAGGGA AAAATTCCCC
TATACGGTCC GTGTTGTTTC GGAGGTCTTG GAATCGAACG GTTCTTCTTC GATGGCTACC
GTATGCTCGG GAACCCTTTC CATGCTTCAT GCGGGCGTTC CCATGAAAAA GCCGGTTGCC
GGTATTGCCA TGGGGCTTAT CACCGAAGGA AATGACCGCT ACGCCATTCT TTCCGACATT
CTTGGAGAAG AAGATCACTT AGGCGATATG GACTTTAAGG TTGCAGGTAC GGCCGACGGA
ATTACGGGCT TCCAGATGGA CATAAAGATT GCAGGTGTTT CGCCTGAAAT TATGAAAAAT
GCCCTTGCAC AGGCCAAAGA AGGAAGAATG CATATTCTCG GCATAATGAA CCAGTGTATT
TCCGCTCCCA ATGCGGAACT TTCCCAATAT GCTCCAAGGG TTGAGATGAT GACAATACCC
GAAGACAAGA TCGGTGCACT AATCGGCCCC GGCGGAAAGA ATGTAAAAGC CATTTCGGAT
AAGTATAATG TAACAATCAA TACCGAAAAT GACGGTACCG TAACCATTTA CAGCAAGGAC
GGAACTTCGG ATCTTAAAGG CGCAAAGAGT ATTGTTAAGG GCATCACAAG CGATCCCGAA
GTCGGAATGG TCTATGACGG AACCGTAAAA AAGATTATGG ACTTCGGTGC CTTTGTTGAA
ATACTTCCCG GAAAAGAAGG TCTTTGCCAT ATTTCAAAAC TTTCACGCTC CAGAGTCGAA
AAGGTTTCGG ATGTGCTTAA AGAAGGACAG GAAATACCCG TTAAACTTTT GGAAATCGAT
AAGCTCGGAA GGCTCAACCT TTCTTATGTC GATGCTCTTG AAGAGCGTTC CAAATAA
|
|---|
| Protein sequence | MRKRVTYKIG EHDLILETGY LAKQANGSIY AEYAGSAILA TICASGQAQE GLDYVPLTVD
YNEKYYAAGK IPGGFIKREG RPKDKEILVS RLIDRPMRPL FNKEFGREIQ LVPTCISTDM
INPPDILAVI ASSAAVHISD IPFDGPVAAA RVAYKNGEYI INPTFSQIET ADMEIVVAGT
KEGITMVEGG ANEVSEEVML TALEKAHEMI KSLCKMQEDL RELAGKEKLP LVPLEAELEN
KQAIYDEAFP RLSKTLYLST KMERREESDK VKKELAEKYA EQLEDEIQLK LFNALFEEME
YNILRTNILD KGLRVDGRGT KDIRPITCEI GVLPRPHGSA VFTRGETQSL GVVTIGTVFD
EQIYDDIEGD RRENFILHYN FPPFSVGEVG RLGTGRREIG HGNLAHRSLY PMVPEREKFP
YTVRVVSEVL ESNGSSSMAT VCSGTLSMLH AGVPMKKPVA GIAMGLITEG NDRYAILSDI
LGEEDHLGDM DFKVAGTADG ITGFQMDIKI AGVSPEIMKN ALAQAKEGRM HILGIMNQCI
SAPNAELSQY APRVEMMTIP EDKIGALIGP GGKNVKAISD KYNVTINTEN DGTVTIYSKD
GTSDLKGAKS IVKGITSDPE VGMVYDGTVK KIMDFGAFVE ILPGKEGLCH ISKLSRSRVE
KVSDVLKEGQ EIPVKLLEID KLGRLNLSYV DALEERSK
|
|---|
| |