| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1039 |
|---|
| Symbol | |
|---|
| ID | 2741313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 1067212 |
|---|
| End bp | 1068075 |
|---|
| Gene Length | 864 bp |
|---|
| Protein Length | 287 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637159912 |
|---|
| Product | riboflavin biosynthesis protein, putative |
|---|
| Protein accession | NP_971647 |
|---|
| Protein GI | 42526549 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0196] FAD synthase |
|---|
| TIGRFAM ID | [TIGR00083] riboflavin kinase/FMN adenylyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000237868 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGATT TTAAGATAAT TTCGTGGGAG GGGCTTGTTG AAGCAGCTCA GTCTGTTTTA
ACGGGTTCGG ATTTTTTCCC CGAAGGAAAA GAAACAGCGA TTAGTGTGGG CGGTTTTGAC
GGCCCCCATA AAGGCCATGA TAAGCTTTTA CGGCAGGTAT TGACCTATGC AGCCGAAAAT
ACCCTTGTTC CGGGGCTTGT TACTTTTTTC CGCTCGCCGG CAGCAGTAAA AAATAAGGCT
TATTCGGGCG ATGTTTCATC GCTCAGGCTA AGATTAAAAA AGTTTCAGGA ATTAGGTTTT
CATTTCATTG TACTTATTGA CTTTTCCGCA AGTTTTGCTA AAATAGAAGG AACTGCGTTC
TTTGATATTC TTATAAAGAC TATCCGTATG AAGTATTTGG CTGTAGGCAG CGATTTTTTC
TGCGGATATC GCCGAGGATT GGGGGTCGAC GATTTAAAAA AAATCGCCCC TCAGAAAGGC
TTTTGCTTTG ATTCCATAGA TCCCGTAAAT CGAGGCTCCC TTAAGATTAG CTCCAGTGCT
ATCAGGGAGG CTGTACGTTT AGGGGATTTT TCCCTTGCAA AAGAGCTTTT GGGTTATCCT
TTTTTATTTG ATTTCGTAAG TTTGCCGTGG GAGGTAAAGG ACAAAAACAG CATTTTTGCT
CCCAAGGCAT ATATATCGCA GATTCTTCCG CAGAGCGGGA AGTATAGGGT CTTGGTTCAA
AAAACAGACA GGCAAGAACA AGAAGCTCAT TGCCTTATAA ATGACGACGG GCTGCTCTTG
TGTTTTCCTG AAAAGGATTC AAAAGCTTTT GATCTAAAAG ACCTTAATAA TTTTGACACT
ATAGAATTTA TTTGTAAGGA GTAA
|
|---|
| Protein sequence | MDDFKIISWE GLVEAAQSVL TGSDFFPEGK ETAISVGGFD GPHKGHDKLL RQVLTYAAEN
TLVPGLVTFF RSPAAVKNKA YSGDVSSLRL RLKKFQELGF HFIVLIDFSA SFAKIEGTAF
FDILIKTIRM KYLAVGSDFF CGYRRGLGVD DLKKIAPQKG FCFDSIDPVN RGSLKISSSA
IREAVRLGDF SLAKELLGYP FLFDFVSLPW EVKDKNSIFA PKAYISQILP QSGKYRVLVQ
KTDRQEQEAH CLINDDGLLL CFPEKDSKAF DLKDLNNFDT IEFICKE
|
|---|
| |