| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE1027 |
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| Symbol | rnc |
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| ID | 2741505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | + |
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| Start bp | 1057702 |
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| End bp | 1058442 |
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| Gene Length | 741 bp |
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| Protein Length | 246 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637159900 |
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| Product | ribonuclease III |
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| Protein accession | NP_971635 |
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| Protein GI | 42526537 |
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| COG category | [K] Transcription |
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| COG ID | [COG0571] dsRNA-specific ribonuclease |
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| TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000153417 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGTTTCCGA TAAAAAGCGG TCTTGAGCCC AAGAGGAAGC AGGAGCTCCT TGAGTTCCAA
AAGCAAGCGG GATTGAAGTT TAAAGATTTA CGCTTGCTTG ATCTTGCTTT CCATCACAGG
TCTTTTTCCA ACGAACATAA TAATTTCCAC GCAAATAATG AACGCCTCGA GTTTTTAGGG
GACTCCGTAC TCGGACTTGT CGCGGCTTCC TATCTTTATA AGTCTTTTGA AGACAGGCCG
GAGGGGGAGC TTGCAAAGAT AAAGGCTTCC GCTGTTTCCG AAGATGCTCT TTCAAAGACT
GCTTCTAAAC TGAATATAAG TAATTACTTG GTTTTAGGAA GGGGTGAAGA AATGTCCGGC
GGAAGAGAAA AAAAGGCCAT CCTTGCCGAT GCCCTTGAAG CCGTTATCGG TGCCTACTAT
ATTGATTCGG GTTTTAAAGC GGCTCAAAAA TTTGTTCTAA GACTTTTGGA ATCTACCATC
CATTCAGTCC TGGAAAAGAA GTTTATAAGC GACTATAAAT CCCTCCTTCA GGAATTGGTA
CAAAAGAAAT TTAAAACGGT TCCCAAGTAT GAGCTTAAAA AGGCTAGCGG ACCCGACCAT
GACCGTACTT TTTGGTTCTC GGTTTCAATA AACGGTAAGG TTTATGGACC TCTTTCGGGT
AAAACAAAAA AAGAAGCTGA ACAGTCTGTA GCAAAAGTGG CCTATGAAAA CCTGTGTTCA
GAGTCTACTG TGTCAAAATA A
|
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| Protein sequence | MFPIKSGLEP KRKQELLEFQ KQAGLKFKDL RLLDLAFHHR SFSNEHNNFH ANNERLEFLG
DSVLGLVAAS YLYKSFEDRP EGELAKIKAS AVSEDALSKT ASKLNISNYL VLGRGEEMSG
GREKKAILAD ALEAVIGAYY IDSGFKAAQK FVLRLLESTI HSVLEKKFIS DYKSLLQELV
QKKFKTVPKY ELKKASGPDH DRTFWFSVSI NGKVYGPLSG KTKKEAEQSV AKVAYENLCS
ESTVSK
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