| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0906 |
|---|
| Symbol | |
|---|
| ID | 2739946 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 923304 |
|---|
| End bp | 924779 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637159780 |
|---|
| Product | ABC transporter, ATP-binding protein |
|---|
| Protein accession | NP_971516 |
|---|
| Protein GI | 42526418 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.464739 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAATC TGAATGATGT AAGCTACAAA TATAACGATA CTGCGGCACA GGCAATTCAA
CATATATCTC TGTCCGTAAA AAAAGGAGAA TTGGTTGTTA TTACCGGAAA AAGCGGCTGC
GGAAAAACAA CGCTGTTTCG TTGTGTGAAT GGGCTGTGTC CCCGTTTTTA TGAAGGAGAA
ATAACCGGAA GTCTTACATT AAACGGCAAA GTTCTTTCGT CGATGCGTAT ATGCGATATA
TCAAACATTG CAGCGTCCGT TTTTCAAAAT CCTGAAAGCC AGTTTTTTAC CACCGATGTA
CTTTCCGACC TTGTATATCC GTGCGAAAAT TGCGGTATAG AAAAAGAAGA AATACAAGAG
CGGCTGCACC GTGTTACAAA ACTGCTATCG CTGGAACCGC TTTTGAACAG AAAGCTTTCG
GAACTCTCAG GAGGTGAAAA ACAAAAGATT GCAATCGCTT CGGTTTTAAT GTTGGACACG
CGCGTTGTAC TGATGGACGA GCCGTCTTCC AATCTCGATT ATCAATCCGT CGAATTGCTT
ACACAAATAC TTGCACAGCT AAAATCAAAA GGCTACACGC TGCTCATCAT TGAGCACCGG
CTGCATTATT TGGCGGAACT CTGCGACCGG CTCATTGTAA TGGAAAACGG GTCCATAGTA
CGGGAATATG AAAAAGATTT GTTATGCACT ATCGGTAATG ATGAGTTCCA TAAACAAGGA
CTTCGCGGCT TGCATTTATT TCAAAATAAC AGCAATACAC TGATTACTCC GCAGCGGCAA
CATACAGACA AACGGTTATT GACGCTGCAT GATATTCATT TTGGCTATCG GAAAAACACT
GAGGTTTTAA AAGGAATACA TCTTTCGATA TATCCCGGAG ACAAGATTGC TTTAATCGGT
AAAAACGGCT GCGGAAAAAC AACGCTGGGG AAAATCCTGT GCGGATTAAA AAAGGAACAG
AGCGGTACCG TTTTGTTGGA CGGAAGATCA TTCCCTGCAA GGGTGCGCAG TAAGACCGCC
GGTTACGTGA TGCAAAATGT AGACTTTCAG CTTTTTGGGT GCAGCGTCTA TGATGATTTA
TTGCTCGGTA ACGAAGCACT GCCCGACAAA GAAAACCGAA TACAAACAGT GCTTGAAAAG
CTCAGTCTTT CGGCCTTGCA AGAACAACAC CCGACAACGC TATCGATGGG ACAAAAACAG
CGCTTGGTAG TCGCCGCATC ATTTTTACAA AATAAGCGGC TCACTATTTT TGACGAACCG
ACAAGCGGTT TGGATTACGG CAGTATGCAA AATGTCTGTG CGTTAATCGA TTCGATAACG
GGCAAGACAA ACGCCTCCGT TATTATCACG CATGATTATG AGTTCATTTT AAACACCTGC
AATAGAGCGG TTCTTTTGGA AGACGGACAA ATAAAGGAAG ATTTTCAATT GAACGGTTCG
ATGCAGTTGG AATATATTTT TAAAGAGAGG TTATAA
|
|---|
| Protein sequence | MINLNDVSYK YNDTAAQAIQ HISLSVKKGE LVVITGKSGC GKTTLFRCVN GLCPRFYEGE
ITGSLTLNGK VLSSMRICDI SNIAASVFQN PESQFFTTDV LSDLVYPCEN CGIEKEEIQE
RLHRVTKLLS LEPLLNRKLS ELSGGEKQKI AIASVLMLDT RVVLMDEPSS NLDYQSVELL
TQILAQLKSK GYTLLIIEHR LHYLAELCDR LIVMENGSIV REYEKDLLCT IGNDEFHKQG
LRGLHLFQNN SNTLITPQRQ HTDKRLLTLH DIHFGYRKNT EVLKGIHLSI YPGDKIALIG
KNGCGKTTLG KILCGLKKEQ SGTVLLDGRS FPARVRSKTA GYVMQNVDFQ LFGCSVYDDL
LLGNEALPDK ENRIQTVLEK LSLSALQEQH PTTLSMGQKQ RLVVAASFLQ NKRLTIFDEP
TSGLDYGSMQ NVCALIDSIT GKTNASVIIT HDYEFILNTC NRAVLLEDGQ IKEDFQLNGS
MQLEYIFKER L
|
|---|
| |