Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TDE0903 |
Symbol | pcrA |
ID | 2739943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Treponema denticola ATCC 35405 |
Kingdom | Bacteria |
Replicon accession | NC_002967 |
Strand | + |
Start bp | 920368 |
End bp | 922356 |
Gene Length | 1989 bp |
Protein Length | 662 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637159777 |
Product | ATP-dependent DNA helicase PcrA |
Protein accession | NP_971513 |
Protein GI | 42526415 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0210] Superfamily I DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000149159 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGAAT TTACTGAAGG TCTTAATCCC GAACAGTTTA AAGCCGTTAC TACTATTAAC GGGCCGGTGC TTATAATAGC GGGAGCCGGT TCGGGGAAAA CACGCGTTAT CACTTTTAGA ATTGCACACA TGCTCGACAA GGGAATCCCT CAGTCTCAGA TTTTGGCTCT TACCTTTACC AACAAGGCTG CCAAGGAAAT GGCCGATCGG GTAAAAGAGC TTACCGGTAA AAAACTTCAA AATCTGACTG TCAGCACATT TCACGCTTTT GGAGTTAAGG TTCTGCGTTC CCATATCGAT AAAATAGGCT GGAGAAGTAA TTTCAGTATT TATGACGAAA CCGACCGCAA TCAGTTAATT AAAGAATGCG GAAGAGAACT TAAATTCTCG GCAGATGCCT TGGATGTTTA CAAGGTAGGC ATTCTTTTTT CCAATATCAA AATGGGAAGA AAGGATTGGA CAAACGAGCA TGATTCGTAC AAGGCTCTTT ATAAAGAATA TCAGGATGGG CTTAAACTTT ATAATGCAGT AGACTTTGAC GACCTTATAA TGCTTCCCAT AAAAATATTT AAAGAACATC CCGAAGTCTT GGCGGAGTAC CGCGAAAGAT ACCGATATAT AATGGTTGAC GAATTTCAGG ATACCAGCAC ACAGCAATAT AATTTTATGA AGCTCATCGC CGACAAAAAT ATCTGTGTAG TAGGCGATGA CGATCAATCT ATTTATTCTT GGCGGGGTGC CAGTTTTGAA AATATCCGCA ACTTTGAAAA AGACTTTCCC GAAATGATCG AAATAAAACT TGAACAAAAC TATCGTTCAA CAGGGACAAT TTTGGCTGCC GCAAACGGTG TAATTTCTCA TAATGTAAAC CGCAAGGTTA AAGCTCTTTG GTCAGAAAAA GACTCGGGGC GCCCCATCGA AATTTTTATT CCCGAAAACG AGGCGGCGGA AGCCGATTTT ATTTCGGACA TGATTTTAAG CTTAAAGCAA AGAGAAGGTT TTAAGTATTC CGACTTCGGA GTTTTAATCC GTGCCAACAG TTTAAGCCGC CCATTGGAAG AATCCTTTTT GGAAGTAAAC ATTCCGTATA GAATGTCGGG GGGGACAAGT TTTTTTCAGC GGAAGGAAAT AAAGGACCTT ATAAGCTATC TGCGTGTTGT TGCAAACCCC GACGATGATG TAAACCTTCT GCGCATTATC AACACGCCGA GGCGCGGCAT AGGCAAAAAA ACTCTTGAAA CACTTTCCGC TCTTGCAACG GAAAATTCCT GTTCGATGCG GACTGCAATC CGCCTTCTTC TTGAAAACCC GCCTGAAGAT ATGAGGGGAA AAAGCATCGA AGATTTAAAA GAATTTGCCG AGCTTATAAG CACACACCGA ACCCAGCTTC TTTCTGGGAA GGGCCTTGCC CAAAAGGTTA GAAAACTTTT GGACGACATC GCCTATAACG AATACCTTAT CGCCGAATAC CAAAAAAGTG AAAAGGCTGC TCAATTTAAA ATGATGAATA TCGAAAGTTT TTTGCACTCG ATGGACGATT GGGAAAACAA TCCCGACAAC TTGGACGGAA GTCTCTACGA TTATCTTAAC CGCATTACCC TTTTAACCCG CGATGATACT GAAGAAGAAA AAGGCGAAGT AAATATTATG ACCATTCATT CTTCAAAGGG CTTGGAGTTT CCTGTGGTTT TTATTGCGGG AGCGGAAGAC GGCCTTATTC CCCATGCAAG GAGTGTCGAA GAAAATGACG GAGATGTCGA AGAAGAGCGC CGCCTTTTCT ATGTGGCTAT TACCAGAGCC CAGCAAAAAC TTTTTATCAC AAGCTGCAGA CAAAGACGAA AGCAGGGCGG CATAACCGAA TGTGCTCCGT CTCCTTTTTT GGATGAGATT CCTGCCGACC TTGTCGAATA CCACGAGCCC GATGCCCAAG CCGAAGAAGA ACGCATCGCC GATATCTTCA GCCAAATGAA AAAAAAGTTT TCGATGTAG
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Protein sequence | MNEFTEGLNP EQFKAVTTIN GPVLIIAGAG SGKTRVITFR IAHMLDKGIP QSQILALTFT NKAAKEMADR VKELTGKKLQ NLTVSTFHAF GVKVLRSHID KIGWRSNFSI YDETDRNQLI KECGRELKFS ADALDVYKVG ILFSNIKMGR KDWTNEHDSY KALYKEYQDG LKLYNAVDFD DLIMLPIKIF KEHPEVLAEY RERYRYIMVD EFQDTSTQQY NFMKLIADKN ICVVGDDDQS IYSWRGASFE NIRNFEKDFP EMIEIKLEQN YRSTGTILAA ANGVISHNVN RKVKALWSEK DSGRPIEIFI PENEAAEADF ISDMILSLKQ REGFKYSDFG VLIRANSLSR PLEESFLEVN IPYRMSGGTS FFQRKEIKDL ISYLRVVANP DDDVNLLRII NTPRRGIGKK TLETLSALAT ENSCSMRTAI RLLLENPPED MRGKSIEDLK EFAELISTHR TQLLSGKGLA QKVRKLLDDI AYNEYLIAEY QKSEKAAQFK MMNIESFLHS MDDWENNPDN LDGSLYDYLN RITLLTRDDT EEEKGEVNIM TIHSSKGLEF PVVFIAGAED GLIPHARSVE ENDGDVEEER RLFYVAITRA QQKLFITSCR QRRKQGGITE CAPSPFLDEI PADLVEYHEP DAQAEEERIA DIFSQMKKKF SM
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