| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0825 |
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| Symbol | |
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| ID | 2739509 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Treponema denticola ATCC 35405 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002967 |
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| Strand | + |
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| Start bp | 846102 |
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| End bp | 847700 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637159698 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase, putative |
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| Protein accession | NP_971435 |
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| Protein GI | 42526337 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
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| TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000688489 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATACA CAAAATCGAT TGCGGAATGC ATCAAAGCTA TTGAAGTTGT AAATTGTTTT
GGAAACGATA AATCTCTTAT CAATTCTGTA GAGTATGATT CACGTAAGGT TAGGGCTTAC
AGTTATGACG ATAAGACGGG CTTAAAAAAA GGAGCCGCCT TTTTTGCTCT TCCCGGGATT
CATACCGACG GAAAAAAATT TATAAATTCT GCAATCGAAA ACGGAGCCGT CTGTATTTTT
TATGAGGGAG ATTTAAATAA TCATTCTTGT GATGAAATTT GTTTTGTTCA GGTGAACGAT
GTGCGCAAAA CCATGTCCAA GGTTTCTGCC CTTCTTTATG ATGAACCGTC AAGGACACTA
GGCGTAATAG GTGTTACCGG AACCGAAGGG AAGAGCAGCA CTGTTTCTTT TATCTTTCAG
CTTTTAAACC TTTGCGGAAA AAAGGCAGGC TTTTTTTCTA CCGTAGAATA CTCCATAGAC
GGGAACGTAA TTCCGAACCC GGAACATCAG ACTACTCCCG AATCTAATGT CGTTCAGCTG
CGTCTGGCTC AAATGAGGGA TTCAGGCTGC AGCTATGCCG TAGTTGAAGC CTCGTCGCAC
GGTCTTTCCC CGAAGACTGC CCGTCTTGAA GATGTGATTT TTGATGCAGG TGTTTTTATG
AACGTAACTC AGGAACACTT GGAATTTCAC GGAACCATCG AGCAGTACCG ATATGATAAG
GCCAATCTTT TTAGGGCTTT GGATAAAAAT CCGGGAAAAG GATTTCCCAT ATTCGGAATA
GTAAACTATG AAGATCCGTC CGCCCCTTAT TTTATGGAAG CAACTCAAAA AAATGTCTAC
CCTTTTAGCA CCGAGCTTAA AGACCTAAAA AAAATTGAAG AATATAAAGG TCTTTTTGCA
AAGGATATTG AAGAGTCTTC AAGCGGAATT AAATTTACGC TTTGCGATTT TTCTTCTAGA
AAAGAATACG GGTGCGAATT AAAACTTGCA GGAATCTTTA ATGTAAAAAA TATTCTCGCC
TCGGTCTTGG CAGTACAAAG AATTACGGGC CTTGATATCG CGTGCATAAT CGAAAAACTT
CCTCTTGTAA AACCCGTAAA GGGAAGAATG ATGCTGATAG ATGAGGGGCA GGATTTTGAG
GTGCTTATCG ATTATGCTCA CACGCCTTCT TCCTTTATGA CAATTTTTCC TTCAATAAAA
GAACGCATAA AAAAATCGGG AGGAAAGGTC ATAAGTCTTT TCGGTTCAGG CGGAGAAAGA
GACGTAAAAA AGAGGCCGGA GCAGGGAAGG ATTGCAGCCC TATATTCCGA TATTGTAATT
CTTGCAGACG AAGATCCGCG CGGCGAGGAC TCCGTTGAAC TTTTGGAAAT GATAGCCGCA
GGCTGTCCCG AAAAAAAACG CGGAGAAGAA CTCTTTATAA TCCCCGACCG CCCCTCTGCA
ATCAAAAAAG CCTTCAGTCT TGCAGGTAAA AACGATGCAG TCCTCCTTTT GGGAAAGGGT
CATGAAAACT CCATCATCTT TAAAGATAGA ACCATGCCCT ACGATGAAGA AACCACGGCA
AGAAAATTAT TAATCGGCGC AGACTGTACA AATCCGTAA
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| Protein sequence | MEYTKSIAEC IKAIEVVNCF GNDKSLINSV EYDSRKVRAY SYDDKTGLKK GAAFFALPGI
HTDGKKFINS AIENGAVCIF YEGDLNNHSC DEICFVQVND VRKTMSKVSA LLYDEPSRTL
GVIGVTGTEG KSSTVSFIFQ LLNLCGKKAG FFSTVEYSID GNVIPNPEHQ TTPESNVVQL
RLAQMRDSGC SYAVVEASSH GLSPKTARLE DVIFDAGVFM NVTQEHLEFH GTIEQYRYDK
ANLFRALDKN PGKGFPIFGI VNYEDPSAPY FMEATQKNVY PFSTELKDLK KIEEYKGLFA
KDIEESSSGI KFTLCDFSSR KEYGCELKLA GIFNVKNILA SVLAVQRITG LDIACIIEKL
PLVKPVKGRM MLIDEGQDFE VLIDYAHTPS SFMTIFPSIK ERIKKSGGKV ISLFGSGGER
DVKKRPEQGR IAALYSDIVI LADEDPRGED SVELLEMIAA GCPEKKRGEE LFIIPDRPSA
IKKAFSLAGK NDAVLLLGKG HENSIIFKDR TMPYDEETTA RKLLIGADCT NP
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