| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE0813 |
|---|
| Symbol | |
|---|
| ID | 2739555 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 834181 |
|---|
| End bp | 835767 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 637159686 |
|---|
| Product | ABC transporter, ATP-binding protein/permease |
|---|
| Protein accession | NP_971423 |
|---|
| Protein GI | 42526325 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00386251 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGT TGTCTAATCT TGAAAAATCG TTTATATTTT TTGCTCTTCT ATTTTTAATT
TTTTCGGCAA CCGCCGTTAC GGCTTTTTCA TGGCTAAGCG GAAAAATAGC CGATGCTGCC
GTAAGCAAGG ATATTGAAAA AATAATTATC TTTGTATCTG CATATTTTGT TGCAATACTG
GTGAGGGGAG GAGCGCACGG GCTTTATTCT TATTTTTTCG GCAGGTTTAA AACAAACCGT
TTGAAACTTT TACGGCAAGG TCTTTTTCAT TCTTGGGTAA AAGCCGACTA TGAAGAATTC
TATAATATTG AAGAAGGAAA GAAAATTTCT TATTATCAAC AACAGCTTCC TTCTCTCGAC
GGAATATACT ATCAATCCTT CTATGGAATG GGGCAGATTC TTATGGAAAC GGTTTTTGCT
TCTGCCTTAT TTTTATATGT TAATATAAAA TTGGCTATTG CAGGGCTCTT TTTTATTTTT
ATTACTTCGA TTATTCCTCA AGTTTTTAAA AAACTCTTGG ATAAAACTCA ATCCGAATCC
ATAAAAAGTG TAAATGAGCA CATGGGAGAA TTTTCCGATT GGTTAAAAGG CTTTGAGGTA
ATAAAAAATT ACGGAAGCGA AGGCCGTTTT CAAAACCTCT TAAATAAATC GGTAGAAAAG
CTGGCAAAAA AACAATTTTC GGTTTCAGCA GCAAATGATG CATCACAGAG TCTTTCATTT
TTTGCATCTC AATTAAGCAT AATCGCAGTT GCTTTTTACG GCGTTTATAT GATTAATAAA
AATGAATTAA GCATAGCGGA GTTTATGATG GCTAACGGCT TGGTTGTACA GCTAAGGTCT
CAAGTTTATT ATATCTCTAT GTATGTGAAC CGCTTTATTA TGAGTAAGGT TATTTTTGAA
GGTTATAAGA CCTTGATAGT TAAGGAACCG GAAGAAAAAA AGATTGAAGC CGATATTTCT
TCGGCCGATA TATCGTTTAA TGATGTAAGT TATGCTTACA GTGAGCTGCC TGTTCTTCAA
AATGTAAATA AAAAATTTAC CGACAAGGGT ATACACATCA TTTACGGAGA AAGCGGAAGC
GGAAAATCTA CGGCGATGAA AATTCTTTTA GGTCTATTAA AACCTAAAGG TGGAAACATA
GTATTGGATG GAAAAAATAT TCATTCCATA AAAAACAGGT CAGACCTCAT TTCGTTTTTA
GCCCAAGAAG CCGTTTTCTT TGATGATACC TTAAAAAACA ATTTAACATT AGGCGAAGAT
ATTGAAGAAG AAAAAATATT CACTTTAATG GAAAAATTAG GCTTGGAAAA ATTCGCGAAT
ACAGAAGCCT TAAATATGGA CTTTACCCAC ATCGAAAACA AATTTTCAGG CGGTGAGTTA
AAGCGTTTAA GCTTTGTGCG AACCCTCTTG AGGGATACGC CTGTAGTAAT TTTCGACGAA
CCCTTTGCAA ATATAGATGC TCAAAATATA GAAAGAGTCG AAGACCTTAT TTTAAGTCTA
GATGATAAAA AAGTTTTTAT CGTAACCCAT CAGCTTAACG AGAGGATCAA AGAAAAAGCC
GCTTCCCTCT GGAAGATAGG AGCTTGA
|
|---|
| Protein sequence | MKKLSNLEKS FIFFALLFLI FSATAVTAFS WLSGKIADAA VSKDIEKIII FVSAYFVAIL
VRGGAHGLYS YFFGRFKTNR LKLLRQGLFH SWVKADYEEF YNIEEGKKIS YYQQQLPSLD
GIYYQSFYGM GQILMETVFA SALFLYVNIK LAIAGLFFIF ITSIIPQVFK KLLDKTQSES
IKSVNEHMGE FSDWLKGFEV IKNYGSEGRF QNLLNKSVEK LAKKQFSVSA ANDASQSLSF
FASQLSIIAV AFYGVYMINK NELSIAEFMM ANGLVVQLRS QVYYISMYVN RFIMSKVIFE
GYKTLIVKEP EEKKIEADIS SADISFNDVS YAYSELPVLQ NVNKKFTDKG IHIIYGESGS
GKSTAMKILL GLLKPKGGNI VLDGKNIHSI KNRSDLISFL AQEAVFFDDT LKNNLTLGED
IEEEKIFTLM EKLGLEKFAN TEALNMDFTH IENKFSGGEL KRLSFVRTLL RDTPVVIFDE
PFANIDAQNI ERVEDLILSL DDKKVFIVTH QLNERIKEKA ASLWKIGA
|
|---|
| |