Gene TDE0791 details

Gene Information

• Locus tag: TDE0791
• Symbol: rpoA
• ID: 2740669
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 817482
• End bp: 818537
• Gene Length: 1056 bp
• Protein Length: 351 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 637159664
• Product: DNA-directed RNA polymerase subunit alpha
• Protein accession: NP_971401
• Protein GI: 42526303
• COG category: [K] Transcription
• COG ID: [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit
• TIGRFAM ID: [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.000235989
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCCGTA AAAATCTTTT AAAAGGATTT AAGAAGCCGA AAGGCTTGGA ATTTGCTCAG 
CAAGAATCAA CCGAAAGCTA TGGTAAGTTT ACGGCATCCC CTTTTGAGAC CGGTTTTGGA 
ACAACAATCG GAAATTGTTT GAGGAGAATT TTATTGTCCT CAATTCAAGG TTATGCCATA 
TCGGCAGTGC TTATAACCTC GCATGATGCC GATGGCGTAC CCCACACAAT TTCAAGTGAG 
TTTGAAAATA TTCCGAACGT CTCCGAAGAT ACGCTGGAAA TTTTAAATAA ACTAAAGCAG 
ATCCGCCTCC GTTTATCGGA TGAGTCGGAA CAAGGTGACT TTCATTTTGA ATTTAAGGGG 
CCTGCGTCGA TAACCAGCAA AGATTTTGCC GTTGAAGGAC AGCTTGAAAT TTTAGGCGAA 
CCTTTTTATG TTATGGAACT TATGAAGGGT GCTAATGTTT CGTTTGATGT TCAAGTAGAT 
TTCGGCCGAG GTTATGTACC GGCAGAAGTT AATGAAAAAT ACATTGAAAT TGTCGGAACT 
ATTCCGATGG ACGCAATCTA CGGTCCTGTT TTAAAGGTAA GCTATGCTAT TGAACCTTGC 
AGAGTAGGAC AAAGAAACGA TTACGATAAG CTCATTCTTG AAATTTGGAC TGACAGTACG 
GTCAGACCTG AAGATGTTTT GGGCGAAGCT GCAAAAATTG CAAAAGATCA TTTTTCCATC 
TTTATTAATT TTAACGAAAA TGATTATCTC GGTGAAGATG AAGATGATAA TGAAGAAGCG 
GTAATTAAAC AGCTTTTAGC AACTTCGATT AATACTCTAG ATTTTTCCGT TCGGGCTAAA 
AATTGCTTGG ACTCGGCCGG TATTAAAACT CTCGGCGAAC TGGCTCAGAA GTCGGAAGAT 
GAGATCGAAA GTATGCGCAA TGTCGGCAGA ATGACTTTAA ATGAAATTCA TGCTAAATTG 
GCGGAATACA ATTTGCGCTT GGGTATGACT GATTACAGTC ATCTAAAAAA TACGATAAAA 
GTATCAAGAC AGAAGGAAGA AACAGATGAA GCATAA 

 

Protein sequence

MARKNLLKGF KKPKGLEFAQ QESTESYGKF TASPFETGFG TTIGNCLRRI LLSSIQGYAI 
SAVLITSHDA DGVPHTISSE FENIPNVSED TLEILNKLKQ IRLRLSDESE QGDFHFEFKG 
PASITSKDFA VEGQLEILGE PFYVMELMKG ANVSFDVQVD FGRGYVPAEV NEKYIEIVGT 
IPMDAIYGPV LKVSYAIEPC RVGQRNDYDK LILEIWTDST VRPEDVLGEA AKIAKDHFSI 
FINFNENDYL GEDEDDNEEA VIKQLLATSI NTLDFSVRAK NCLDSAGIKT LGELAQKSED 
EIESMRNVGR MTLNEIHAKL AEYNLRLGMT DYSHLKNTIK VSRQKEETDE A